| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1397 |
|---|
| Symbol | |
|---|
| ID | 7389125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1175298 |
|---|
| End bp | 1176167 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643650796 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549002 |
|---|
| Protein GI | 222148045 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.157715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACAG AAAATGAAAG CAATGCTCCG ATAGACGGGG GATTGGTTAT CGCAGTATCT
GCCGTTCAGT TGGCGGCGGT CCTTGAAGGG GAAACGGTCG AACAAGGCGG AACGCTGGGC
AACAGGGTCA TAGGTGGATT ACGCTTGCTC GGCTGCGCTG CGGAAGGCCT GACGGCCGGA
GCACTTCTTG CCACACCAGA ACCGACAATG TTGACCAAGG TCGGTGGAGG AGCTTTGGCG
CTTCATGCCG CAGACCAATG CACCACGGGC GGACGACAAT TATGGACCGG GCAAAACGAA
CGCTCCTGGA CGGAGAAAGG TACGTCGTCC CTCGCGAAAT CTCTTGGCGC ATCGCCCCAG
GCGGCAGACA ACATCGGCAT GGCGATGGAC TTTGTGGTGC CAATCGGCGG GGCTGCAATG
GCTGGCGCAG TTCGCGCAGC CGCCATCAGA TCCGGCCGTA TCTCTTTGAT GCAACATGAA
GCGCAGGCAG GAAGCCGGCT TGGCGGCCAT ACGATAGAGA GGCATATTGC CAAGGATGAG
GCATTCCTAC GCCAACGGAT CGCACAAACA GCAACCAATC GCGCGCCCCC TCCCGTTATC
TCGTCCTTCA GCAGTCTGCG CATCGCTGAA GATCAAATTT CCAGAGCATT GAGGTTGAAC
CAGGCACGGA TCATGCAATG GTCACAGAAT GCCGCCATTG GCTCCAAGCT GGAACCACCC
ATTGTGTTCG ATGCAGGACG GGTGATCGGA CAAGGTGTGG TCCGAGCATC AGGGCAGGTT
CAACAAATGA CGAGGCTCCG AATTATTTTA AAGAAAGAGA CTTATAATGG CATGACCCAT
TATATTCTCA CCTCCTATCC CGTTCCGTAA
|
|---|
| Protein sequence | MPTENESNAP IDGGLVIAVS AVQLAAVLEG ETVEQGGTLG NRVIGGLRLL GCAAEGLTAG
ALLATPEPTM LTKVGGGALA LHAADQCTTG GRQLWTGQNE RSWTEKGTSS LAKSLGASPQ
AADNIGMAMD FVVPIGGAAM AGAVRAAAIR SGRISLMQHE AQAGSRLGGH TIERHIAKDE
AFLRQRIAQT ATNRAPPPVI SSFSSLRIAE DQISRALRLN QARIMQWSQN AAIGSKLEPP
IVFDAGRVIG QGVVRASGQV QQMTRLRIIL KKETYNGMTH YILTSYPVP
|
|---|
| |