| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1373 |
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| Symbol | pleC |
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| ID | 7389109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1150143 |
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| End bp | 1152515 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650780 |
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| Product | two component sensor kinase |
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| Protein accession | YP_002548986 |
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| Protein GI | 222148029 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAACG TGCAGCGGGC GACCGCAGCC GATGATCGGT TGCGACCGGA ATTTCCCGGA
TATCTGTCAT TTCTGGATGC GGTCAAGAAC CACGGAGGCG TTGCATACGT CGTCCGAAGC
CTTTCGATTT CCAATACTGA TGCGGCTCTT CGCCAAGTCA TTCCTATTCT GGTGGTTGCT
TTTCTGATCG TCATCGCCAT GGCACGCGGC ATGGGGCTTG TCTCGGAATA TGCGCGAATG
GAAAGCGCCA TCCGTCATTC CACCGCGATG ATGGCCTCTG CGGCGGCGGC CGCCTTATCA
TCCGGCCCCG AGCTTCCGGC AGAACTTGGC AGGGATAAGG CCGAAGCGCT GATCAAGCGC
TTCTTGCCAC CCAATCTTCT TGATGACGAA AGCTTCGTTC TCTTGCTCGA TCCTGAAGGC
AGGGTGGTCG CCAGTTCCGG CAATGGCAGC AGCTTTGTCG GCATGCAGAT CATGGCGCTG
TTTCCGCAAG TCGCGGTGCT CCGTAATTTC GGAGACCAGA CGGGCGCGGT GGAAACCGAC
ATCAACGGCT TCCGCCATAT CGCCGTGCTG ACACCAACCG GCACGGACGG CGCACTGGTA
TTGGCCGCCC ATTCGCTGAA ATCCGCCGCC GATTACTGGC GGGCGGAACT CGCTCTCAAC
GTCACACTGT TTTCGGCCAT CTCGCTGATC CTGATGGGCA TTCTCTATGC CTATTTCGCC
CAGGCAAAAC GGGCGCGGGA AACCTCTGAC GTGTTTGTCG ATTCCAACCG CCGGGTCGAA
ACCGCTTTGT CGCGTGGTCG CTGCGGATTG TGGGATTTCG ACCTCGCCAG CCGAAAACTG
GTCTGGTCGC GCTCGATGTT TGACATTCTC GGCCTACCGC CGTCCAACGA ACCGCTCGGC
TTTGCCGACG CTGCCCGGCT GATGCACCCC GATGACGGCA ATCTTTATGC GCTGGCCCGC
ACCATTGGCC GGGATGGCGA CCGCCATATC GACCAGGTGT TTCGCATGCG TCACGCCAAT
GGCCATTATG TCTGGCTGCG CGCCCGCGCC CAGGTGATCC GCACCAGTTC CGGCAGCCCG
CATGTGATCG GCATCGCGAT GGACGTGACG GAGCAGCACC GGCTGGCACA GCGCTATGCC
GAGGCCGACC AGCGGCTGGC CGATGCCATC GAATGCACCT CGGAAGCCTT CGTGCTCTGG
GACAAAAACG ACCGGCTGGT GATGTGCAAT GCCCATTTCC AGCATGTCTA CGGCCTGCCC
GATAGCGTGC TGGTGCCAGG TGTCGAGCGC GCCGTGGTCG ATGCGGCGGC TGCCCGACCC
ATCATTCAAC GGCGCATTGC CGATCCCTCG GCCAAGGGAA GCTCGCGGAC TACCGAGCTA
CAACTGGCCG ACGAGCGTTG GCTGCAAATC AACGAGCGGC GCACCCGCGA TGGTGGCCTG
GTCTCTGTCG GTACCGATAT TACCCTGCTG AAGCGCCATC AGGAGCGGCT GCGCGAGCAA
GAGCGCCGGC TGATGGCGAC CATTGGCGAC CTGTCTTCGT CGCAGAAAAA GCTGGAACGG
CAAAAGGCGG AACTGTCGGA AGCCAACGAG AAATATCTGG CCGAAAAGCA ACGCGCCGAA
GCGGCCAACA AGGCCAAGTC GGAATTTCTC GCCAATATGT CGCATGAGTT GCGCACGCCG
CTCAACGCTA TCCTCGGCTT TTCCGAAATC CTCTCCACCG GCATGTTCGG GCCGATCGGC
TCGCCGAAAT ACGGTGAATA TGCGCGCGAT ATCCACGATA GCGGCAAGCA CCTTCTCAAC
GTCATCAACG ACATTCTCGA CATGTCGAAG ATTGAGGCAG GCCATATGCT GCTGAAATGC
GAAAATGTCG ATTTCGCCTC GCTGATTGAT GAGACCCTGC GGCTGACGAC GATTTCCGCC
AAGGACAAGA ATATCGCTAT CGAACAACGC ATCGCTTCGG GCCTGGCCAT GACCGCCGAC
CGGCGCGCCC TGAAGCAAAT CCTGCTCAAC ATCCTGTCGA ACGCAGTGAA ATTCACCAAT
GAAGGCGGAC GGATTTCCGT GCGCGCCCAC AAGATCGATG GTGCCGTGCG GCTTCTGGTG
TCGGATACCG GCATCGGCAT CCCCAAACAG GCCATCAGCA AGATCGGCCA GCCCTTCGAG
CAGGTGCAGA GCCAATATGC CAAGAGCAAG GGCGGATCGG GCCTGGGTCT GGCGATTTCC
CGCTCGCTGA TCATGCTGCA TGGCGGCAGC CTGCGGATTC GCTCACGCGA GGGCAAGGGG
ACGGTCGTTT CGATCAACGT GCCGGATAGC CCCTCGCCAC TTCCCCCCTG CCGCAAATCC
GCCGCTCAGG GCCGGGTGCT GACAACCGTC TGA
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| Protein sequence | MANVQRATAA DDRLRPEFPG YLSFLDAVKN HGGVAYVVRS LSISNTDAAL RQVIPILVVA
FLIVIAMARG MGLVSEYARM ESAIRHSTAM MASAAAAALS SGPELPAELG RDKAEALIKR
FLPPNLLDDE SFVLLLDPEG RVVASSGNGS SFVGMQIMAL FPQVAVLRNF GDQTGAVETD
INGFRHIAVL TPTGTDGALV LAAHSLKSAA DYWRAELALN VTLFSAISLI LMGILYAYFA
QAKRARETSD VFVDSNRRVE TALSRGRCGL WDFDLASRKL VWSRSMFDIL GLPPSNEPLG
FADAARLMHP DDGNLYALAR TIGRDGDRHI DQVFRMRHAN GHYVWLRARA QVIRTSSGSP
HVIGIAMDVT EQHRLAQRYA EADQRLADAI ECTSEAFVLW DKNDRLVMCN AHFQHVYGLP
DSVLVPGVER AVVDAAAARP IIQRRIADPS AKGSSRTTEL QLADERWLQI NERRTRDGGL
VSVGTDITLL KRHQERLREQ ERRLMATIGD LSSSQKKLER QKAELSEANE KYLAEKQRAE
AANKAKSEFL ANMSHELRTP LNAILGFSEI LSTGMFGPIG SPKYGEYARD IHDSGKHLLN
VINDILDMSK IEAGHMLLKC ENVDFASLID ETLRLTTISA KDKNIAIEQR IASGLAMTAD
RRALKQILLN ILSNAVKFTN EGGRISVRAH KIDGAVRLLV SDTGIGIPKQ AISKIGQPFE
QVQSQYAKSK GGSGLGLAIS RSLIMLHGGS LRIRSREGKG TVVSINVPDS PSPLPPCRKS
AAQGRVLTTV
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