| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1370 |
|---|
| Symbol | ragA |
|---|
| ID | 7389106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1144917 |
|---|
| End bp | 1145675 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650777 |
|---|
| Product | two component response regulator |
|---|
| Protein accession | YP_002548983 |
|---|
| Protein GI | 222148026 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCG GGACGGGACA AAGCATGGAA ACCGGTAAAA CAGGCTGTGC ATCGGGCAAT
GCGGGCACTA ATGTCGCACG CATGAAAATA CTTGTGATCG AAGACGATCT TGAAGCCGCC
GCTTACATGA CCAAGGCCTT CCGCGAGGCG GGGATCATGG CCGACCACGC CAGCGATGGC
GAGGCGGGCC TGTTCATGGG TTGCGAAAAT ACCTATGATG TGATGATCAT CGACCGGATG
CTGCCGCGCC GCGATGGCTT GTCGGTGATA TCAGAATTGC GCAAGCGCAG TATCAATACG
CCGGTGCTGA TCCTGTCGGC GCTTGGCCAG GTGGATGACC GGGTGACCGG CCTTCGCGCT
GGTGGCGACG ATTACCTGCC CAAGCCCTAT GCTTTTTCCG AGCTTCTGGC CCGGGTCGAA
GTGCTGGGGC GACGCAAGGG GACGCCGGAA CAGGACATGA TTTACCGGGT CGGTGATCTG
GAGCTGGACC GCCTGTCCCA CGAAGTGCGC CGGGCGGGCA AGGAAATCCT GCTCCAGCCC
CGCGAATTCC GCCTGCTGGA ATATCTGATG AAGAATGCCG GGCAGGTGGT GACACGCACC
ATGCTACTGG AACATGTCTG GGACTATCAT TTCGATCCGC AGACCAATGT CATCGACGTG
CATGTGTCGC GGCTGCGCTC CAAGATCGAA AAGGATTTCG ACCGGCCGCT GCTGAAGACG
GTGCGCGGTG CCGGCTATAT GATCAAAGAC GAAAGCTGA
|
|---|
| Protein sequence | MAFGTGQSME TGKTGCASGN AGTNVARMKI LVIEDDLEAA AYMTKAFREA GIMADHASDG
EAGLFMGCEN TYDVMIIDRM LPRRDGLSVI SELRKRSINT PVLILSALGQ VDDRVTGLRA
GGDDYLPKPY AFSELLARVE VLGRRKGTPE QDMIYRVGDL ELDRLSHEVR RAGKEILLQP
REFRLLEYLM KNAGQVVTRT MLLEHVWDYH FDPQTNVIDV HVSRLRSKIE KDFDRPLLKT
VRGAGYMIKD ES
|
|---|
| |