Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1354 |
Symbol | |
ID | 7389095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1130903 |
End bp | 1134694 |
Gene Length | 3792 bp |
Protein Length | 1263 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643650766 |
Product | gene transfer agent (GTA) orfg15 |
Protein accession | YP_002548972 |
Protein GI | 222148015 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.678989 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGGGCC GCGCCGTAGG GTCGCTGGCC GGCAATATGG TCGATCAGGC GCTGATCAAC GGCAGCTCCA CCACGACAGG CTCGCATCTG TCGTCGGCGC GGATCGGCGG GGCCAGCGAA GGCACGGCGC TGAACCGGGC CTATGGCACG GTGCGCATCG GCGGCACGTT GATCTGGGCG ACGCGGTTTG AGGAAAAGAC CACCACCGAG ACCTCCGGCA GTAAATCCAC CGGCACCAAG ACCAAGAGTT ACGATTATTA CGGCAATCTG GCGCTGGCTT TGTGCGAAGG ACCGGTGGCA GCCATCCGCC GGGTCTGGGC CGATGGCGAG GAAGTGGATC TGACCGAGGT TGAGATGCGC TTTTATCCGG GCAGTGAGGA TCAGGGCGTC GATCCGCTGA TTGCCGCCAA ACAAGGCGAG GGCAATGCGC CCGCCTATCG CGGCGTCGCC TATGTGGTGT TCGAGCGCCT GCCGCTCGAC GATTACGGCA ACCGTCTCCC CGTGCTGCAA TTTGAGGTGA TCCGTCCGCT GGGCAGGCTG GAAAGCCAGG TCAGGGCCGT CACCATCATT CCCGGTGCCA CCGAGCATGG TTATGCCACG ACAGCCATTA CCGAGGAAAC CGGCGATGGC GAAGAGCGGA TCATCAACCG CAATACGCTG GTGGCCGCCA CTGACTGGCA AGCCTCTCTG GATGAATTGC AGGCGGTGTG TCCCAATCTC GTCCGTGCTG CGCTTGTTGT CAGCTGGTTC GGCACCGATC TGCGGGCCGA TCAATGCGCT ATCGTGCCAG GGGTCGAAGT GGCGAGGCGT GACGAGGAGA GCCGCGCCTG GAATGTTGCG GGCATCGGGC GCTCACAGGC CCGGCTGGTC AGCCAGAGCG GCGGCGGCCC GGCCTATGGC GGCACGCCCA GTGATAAAAG CGTCATCGAG GCGATCAAGG ATCTGAACAG CCGGGGCATT GCCACCTGCC TCTATCCTTT TGTGATGATG GATATTCCCT CCGGCAACGG ACTGACTGAT CCTTATGGCG GGACAGAACA GGCGGCCTAT CCCTGGCGTG GTCGCATCAC CTGTTCGCCG GCCCCTGATC TTGCCGGCTC GCCTGATGGG ACGGACGCGG TGGACGCCAT CATCGAGGCC TTCATGGGCA AGACCACGGT CGATGATTTC TTCTTGCTCG GCACCACGAT CCTTTATACC GGCAACAAGA ATGGCCGTGA TAGTGGCTAT CGGCGTCTGG TGCTGCATTC TGCGCTGCTG GCTAAAGCCG CAGGCGGGGT GGACAGTTTC GTGATCGGCT CGGAACTGAA GGGCCTGACC ACCCTGCGCG GTGCGGATAA CAGCTTTCCC TTCGTCACCG CCTTGATGCA ATTGGCTGAG GATGTGCGCG CCATTCTGGG GAGCGGAACC AAGCTGACCT ACGGGGCCGA TTGGAGCGAG TATTTCGGCT ATCATCCTGA TGACGGGTCC GGTGATGTGT TCTTCCATCT CGATCCGCTC TGGGCCTGCG CGGCCATCGA CGCTGTCGGC ATCGACAATT ACATGCCGCT TTCGGACTGG AACGACGCGG ATTTTACTGC CGATAATCCG GATGGGTTTA TCATTGCCGA TGACCGTGCC GCCATGCAGG CGCAGATCGC TGCCGGGGAG GGCTATGACT GGTATTACCC AAGCCTTGCC GCCCGCAAGA AACGCGAGCG GGCCGCCATT ACCGACGGGC TGGCGGGCAA GCCCTGGGTC TATCGCTATA AGGACATCCA GTCCTGGTGG GAAAACCACC ATTACAACAG GGTCGGCGGT GTTGAGCTTT CCGCGCCAAG CGCCTGGATG CCGAAGCAGA AACCGATCTG GTTTACCGAA TTGGGCTGCC CGGCGGTGGA GCGTGGTGCC AACCAGCCGA ACGTGTTTCC CGATCCGAAA TCCTCGGAAA ATGCGCTTCC CTATTTCTCT TCCGGCATGC GCTCGGATGC CATGCAGCGG CGGTTTCTTG AAGCGCATCT GGGGTATTGG CAGGGAGAGG CGGCACCCGC TGGCATGGTC GATGCCGACC ACATCTTTCT CTGGACCTGG GACAGCCGGC CCTTTCCGGC CTTTCCCTAT GATACCGATC TGTTTGCTGA TGGCGACAAT TGGCGCAGCG GCCATTGGCT GAACGGCAGG CTGGGCGGCG GCACGCTGGC CGAGGTGATT GCCGCGATAT TGGAAGATTG CGGCTTTACC GATTACGATG TGTCCGCCGT GACCGGTGAT CTCTCTGGCT ATGTGCAGGG CGATGTCTCC TCGGCCCGCA GCCTGATCGA GCCGCTGACC GAGGCTTTCC TGATCGACGT GATCGAGGAT GGCGCTGTGC TGCGGTTCCG CTCACGCCAG GCGGCCAGTT TGAAGGCGGT CGAGACCCGG GTTTTCGTCG ATACCGAAGA CGAACCGTTC TGGACCGAGA CCCGGGGTGA TAGCACCGAT TATGCCGGTC AGGCCGTATT GGATTTTTAC GATCCCGCTA ATGATTACGA GGATGCCAGC GTCCGCTCGC GCCGCGTGGT GGGGACATCC GCCAAGCTTC TGTCCAGTGA TCTGCCTGCG GTGCTGGATG AGGCGAGCGC TTTGGCCGTG GTTGAAACGC AATTGCGCGA TCACCGGATC GGGCGGCGCA GCCTGACCCT GTCGCTATCG CCCTCGCAGC TGGCGCTTCA GCCCGGTGAC GTGCTGACCT TGCCGGACGG GCCATCCGGC CGGTTCCTGA TCACCCGGAT CGAAGACAGC AGCACGCTGT CGTTGGAATT GACCGAAGTG GCAGCGCCGG TGTCCAGCGC GATTACGGTT GCCAGCAGCG GGCGGGTGCA GAGCGGGCGG GCTTCGGACG GGTTTGCGCC GCTGTGGCGG CTGATGGACC TGCCACGCCT TGATGATGGC GAGGACGGCA GTTTTGCGCG CGCGGCGGCC TATGCCAGTC CCTGGCGCAA GATCGTGCTG TCGTCATCCG CCGAGACCGA GAACTATGCG ACCCGCGCCG TGGTGGAAGG GCCTGCGACA CTCGGCACCC TGTCATCGGC ATTGGCTGCG GGTGTGTCGG GCCGGTTCGA TAGGGCCAAT CGTCTGAGTG TCACCCTGTC CTATGGCAGT TTTTCCTCCG GCTCGCGGCT GTCGGTGTTG AACGGCGACA ATCGGCTGGT GGTCAAGGCG GCCAACGATA TCTGGGAGGT GATCGGTTTC CAGACGGCGG ACGAGGTGGA AAGTGGCGTC TGGCAATTGT CCGGCCTGTT GCGCGGCCTC TATGGCACGG AGGACGCCAT GGCCGCAGGC GCGGTCTCCG GCGCGCAGGT GGTTCTGCTC AACAGTGCGG TGACTGCGCT TGACCTTGCC GATAGCGAAA TCGGCCTGAC GCTGAACTGG ATCGCCGAGG CCGCAGGCAC CAGCCTTGCG GCCAAGGGAC CGGTCAGCTT TTCCGGTGGC GTGCGGGCGC TGACCCCGCT TTCCCCGGTG CATCTGCGCG CCAGCCGCGC GCCCAGCGGC GATATTGCGC TGAGCTGGGT CCGGCGCGGC CGCACCGATG CGGATAATTG GACGCCATCC GATATTCCGC TCGATGAGGA AAGCGAACGC TACCAACTCG ATATTCTCGA CGCTGGAAAG GCGGTGCTGC TCAGCGTCAC CCTGACATCT GCGGCCTACA CCTACAGCGC CGAGTTGCAG GCCACAGACT TTGGCGTGGC ACCCTCGACG CTTGCCATCC GGGTCCGCCA GATTGGCCGT CATGCCAGCG GCATAGCGGC TGAAGCACAG TTCACTTTCT GA
|
Protein sequence | MLGRAVGSLA GNMVDQALIN GSSTTTGSHL SSARIGGASE GTALNRAYGT VRIGGTLIWA TRFEEKTTTE TSGSKSTGTK TKSYDYYGNL ALALCEGPVA AIRRVWADGE EVDLTEVEMR FYPGSEDQGV DPLIAAKQGE GNAPAYRGVA YVVFERLPLD DYGNRLPVLQ FEVIRPLGRL ESQVRAVTII PGATEHGYAT TAITEETGDG EERIINRNTL VAATDWQASL DELQAVCPNL VRAALVVSWF GTDLRADQCA IVPGVEVARR DEESRAWNVA GIGRSQARLV SQSGGGPAYG GTPSDKSVIE AIKDLNSRGI ATCLYPFVMM DIPSGNGLTD PYGGTEQAAY PWRGRITCSP APDLAGSPDG TDAVDAIIEA FMGKTTVDDF FLLGTTILYT GNKNGRDSGY RRLVLHSALL AKAAGGVDSF VIGSELKGLT TLRGADNSFP FVTALMQLAE DVRAILGSGT KLTYGADWSE YFGYHPDDGS GDVFFHLDPL WACAAIDAVG IDNYMPLSDW NDADFTADNP DGFIIADDRA AMQAQIAAGE GYDWYYPSLA ARKKRERAAI TDGLAGKPWV YRYKDIQSWW ENHHYNRVGG VELSAPSAWM PKQKPIWFTE LGCPAVERGA NQPNVFPDPK SSENALPYFS SGMRSDAMQR RFLEAHLGYW QGEAAPAGMV DADHIFLWTW DSRPFPAFPY DTDLFADGDN WRSGHWLNGR LGGGTLAEVI AAILEDCGFT DYDVSAVTGD LSGYVQGDVS SARSLIEPLT EAFLIDVIED GAVLRFRSRQ AASLKAVETR VFVDTEDEPF WTETRGDSTD YAGQAVLDFY DPANDYEDAS VRSRRVVGTS AKLLSSDLPA VLDEASALAV VETQLRDHRI GRRSLTLSLS PSQLALQPGD VLTLPDGPSG RFLITRIEDS STLSLELTEV AAPVSSAITV ASSGRVQSGR ASDGFAPLWR LMDLPRLDDG EDGSFARAAA YASPWRKIVL SSSAETENYA TRAVVEGPAT LGTLSSALAA GVSGRFDRAN RLSVTLSYGS FSSGSRLSVL NGDNRLVVKA ANDIWEVIGF QTADEVESGV WQLSGLLRGL YGTEDAMAAG AVSGAQVVLL NSAVTALDLA DSEIGLTLNW IAEAAGTSLA AKGPVSFSGG VRALTPLSPV HLRASRAPSG DIALSWVRRG RTDADNWTPS DIPLDEESER YQLDILDAGK AVLLSVTLTS AAYTYSAELQ ATDFGVAPST LAIRVRQIGR HASGIAAEAQ FTF
|
| |