Gene Avi_1354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1354 
Symbol 
ID7389095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1130903 
End bp1134694 
Gene Length3792 bp 
Protein Length1263 aa 
Translation table11 
GC content63% 
IMG OID643650766 
Productgene transfer agent (GTA) orfg15 
Protein accessionYP_002548972 
Protein GI222148015 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.678989 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGGGCC GCGCCGTAGG GTCGCTGGCC GGCAATATGG TCGATCAGGC GCTGATCAAC 
GGCAGCTCCA CCACGACAGG CTCGCATCTG TCGTCGGCGC GGATCGGCGG GGCCAGCGAA
GGCACGGCGC TGAACCGGGC CTATGGCACG GTGCGCATCG GCGGCACGTT GATCTGGGCG
ACGCGGTTTG AGGAAAAGAC CACCACCGAG ACCTCCGGCA GTAAATCCAC CGGCACCAAG
ACCAAGAGTT ACGATTATTA CGGCAATCTG GCGCTGGCTT TGTGCGAAGG ACCGGTGGCA
GCCATCCGCC GGGTCTGGGC CGATGGCGAG GAAGTGGATC TGACCGAGGT TGAGATGCGC
TTTTATCCGG GCAGTGAGGA TCAGGGCGTC GATCCGCTGA TTGCCGCCAA ACAAGGCGAG
GGCAATGCGC CCGCCTATCG CGGCGTCGCC TATGTGGTGT TCGAGCGCCT GCCGCTCGAC
GATTACGGCA ACCGTCTCCC CGTGCTGCAA TTTGAGGTGA TCCGTCCGCT GGGCAGGCTG
GAAAGCCAGG TCAGGGCCGT CACCATCATT CCCGGTGCCA CCGAGCATGG TTATGCCACG
ACAGCCATTA CCGAGGAAAC CGGCGATGGC GAAGAGCGGA TCATCAACCG CAATACGCTG
GTGGCCGCCA CTGACTGGCA AGCCTCTCTG GATGAATTGC AGGCGGTGTG TCCCAATCTC
GTCCGTGCTG CGCTTGTTGT CAGCTGGTTC GGCACCGATC TGCGGGCCGA TCAATGCGCT
ATCGTGCCAG GGGTCGAAGT GGCGAGGCGT GACGAGGAGA GCCGCGCCTG GAATGTTGCG
GGCATCGGGC GCTCACAGGC CCGGCTGGTC AGCCAGAGCG GCGGCGGCCC GGCCTATGGC
GGCACGCCCA GTGATAAAAG CGTCATCGAG GCGATCAAGG ATCTGAACAG CCGGGGCATT
GCCACCTGCC TCTATCCTTT TGTGATGATG GATATTCCCT CCGGCAACGG ACTGACTGAT
CCTTATGGCG GGACAGAACA GGCGGCCTAT CCCTGGCGTG GTCGCATCAC CTGTTCGCCG
GCCCCTGATC TTGCCGGCTC GCCTGATGGG ACGGACGCGG TGGACGCCAT CATCGAGGCC
TTCATGGGCA AGACCACGGT CGATGATTTC TTCTTGCTCG GCACCACGAT CCTTTATACC
GGCAACAAGA ATGGCCGTGA TAGTGGCTAT CGGCGTCTGG TGCTGCATTC TGCGCTGCTG
GCTAAAGCCG CAGGCGGGGT GGACAGTTTC GTGATCGGCT CGGAACTGAA GGGCCTGACC
ACCCTGCGCG GTGCGGATAA CAGCTTTCCC TTCGTCACCG CCTTGATGCA ATTGGCTGAG
GATGTGCGCG CCATTCTGGG GAGCGGAACC AAGCTGACCT ACGGGGCCGA TTGGAGCGAG
TATTTCGGCT ATCATCCTGA TGACGGGTCC GGTGATGTGT TCTTCCATCT CGATCCGCTC
TGGGCCTGCG CGGCCATCGA CGCTGTCGGC ATCGACAATT ACATGCCGCT TTCGGACTGG
AACGACGCGG ATTTTACTGC CGATAATCCG GATGGGTTTA TCATTGCCGA TGACCGTGCC
GCCATGCAGG CGCAGATCGC TGCCGGGGAG GGCTATGACT GGTATTACCC AAGCCTTGCC
GCCCGCAAGA AACGCGAGCG GGCCGCCATT ACCGACGGGC TGGCGGGCAA GCCCTGGGTC
TATCGCTATA AGGACATCCA GTCCTGGTGG GAAAACCACC ATTACAACAG GGTCGGCGGT
GTTGAGCTTT CCGCGCCAAG CGCCTGGATG CCGAAGCAGA AACCGATCTG GTTTACCGAA
TTGGGCTGCC CGGCGGTGGA GCGTGGTGCC AACCAGCCGA ACGTGTTTCC CGATCCGAAA
TCCTCGGAAA ATGCGCTTCC CTATTTCTCT TCCGGCATGC GCTCGGATGC CATGCAGCGG
CGGTTTCTTG AAGCGCATCT GGGGTATTGG CAGGGAGAGG CGGCACCCGC TGGCATGGTC
GATGCCGACC ACATCTTTCT CTGGACCTGG GACAGCCGGC CCTTTCCGGC CTTTCCCTAT
GATACCGATC TGTTTGCTGA TGGCGACAAT TGGCGCAGCG GCCATTGGCT GAACGGCAGG
CTGGGCGGCG GCACGCTGGC CGAGGTGATT GCCGCGATAT TGGAAGATTG CGGCTTTACC
GATTACGATG TGTCCGCCGT GACCGGTGAT CTCTCTGGCT ATGTGCAGGG CGATGTCTCC
TCGGCCCGCA GCCTGATCGA GCCGCTGACC GAGGCTTTCC TGATCGACGT GATCGAGGAT
GGCGCTGTGC TGCGGTTCCG CTCACGCCAG GCGGCCAGTT TGAAGGCGGT CGAGACCCGG
GTTTTCGTCG ATACCGAAGA CGAACCGTTC TGGACCGAGA CCCGGGGTGA TAGCACCGAT
TATGCCGGTC AGGCCGTATT GGATTTTTAC GATCCCGCTA ATGATTACGA GGATGCCAGC
GTCCGCTCGC GCCGCGTGGT GGGGACATCC GCCAAGCTTC TGTCCAGTGA TCTGCCTGCG
GTGCTGGATG AGGCGAGCGC TTTGGCCGTG GTTGAAACGC AATTGCGCGA TCACCGGATC
GGGCGGCGCA GCCTGACCCT GTCGCTATCG CCCTCGCAGC TGGCGCTTCA GCCCGGTGAC
GTGCTGACCT TGCCGGACGG GCCATCCGGC CGGTTCCTGA TCACCCGGAT CGAAGACAGC
AGCACGCTGT CGTTGGAATT GACCGAAGTG GCAGCGCCGG TGTCCAGCGC GATTACGGTT
GCCAGCAGCG GGCGGGTGCA GAGCGGGCGG GCTTCGGACG GGTTTGCGCC GCTGTGGCGG
CTGATGGACC TGCCACGCCT TGATGATGGC GAGGACGGCA GTTTTGCGCG CGCGGCGGCC
TATGCCAGTC CCTGGCGCAA GATCGTGCTG TCGTCATCCG CCGAGACCGA GAACTATGCG
ACCCGCGCCG TGGTGGAAGG GCCTGCGACA CTCGGCACCC TGTCATCGGC ATTGGCTGCG
GGTGTGTCGG GCCGGTTCGA TAGGGCCAAT CGTCTGAGTG TCACCCTGTC CTATGGCAGT
TTTTCCTCCG GCTCGCGGCT GTCGGTGTTG AACGGCGACA ATCGGCTGGT GGTCAAGGCG
GCCAACGATA TCTGGGAGGT GATCGGTTTC CAGACGGCGG ACGAGGTGGA AAGTGGCGTC
TGGCAATTGT CCGGCCTGTT GCGCGGCCTC TATGGCACGG AGGACGCCAT GGCCGCAGGC
GCGGTCTCCG GCGCGCAGGT GGTTCTGCTC AACAGTGCGG TGACTGCGCT TGACCTTGCC
GATAGCGAAA TCGGCCTGAC GCTGAACTGG ATCGCCGAGG CCGCAGGCAC CAGCCTTGCG
GCCAAGGGAC CGGTCAGCTT TTCCGGTGGC GTGCGGGCGC TGACCCCGCT TTCCCCGGTG
CATCTGCGCG CCAGCCGCGC GCCCAGCGGC GATATTGCGC TGAGCTGGGT CCGGCGCGGC
CGCACCGATG CGGATAATTG GACGCCATCC GATATTCCGC TCGATGAGGA AAGCGAACGC
TACCAACTCG ATATTCTCGA CGCTGGAAAG GCGGTGCTGC TCAGCGTCAC CCTGACATCT
GCGGCCTACA CCTACAGCGC CGAGTTGCAG GCCACAGACT TTGGCGTGGC ACCCTCGACG
CTTGCCATCC GGGTCCGCCA GATTGGCCGT CATGCCAGCG GCATAGCGGC TGAAGCACAG
TTCACTTTCT GA
 
Protein sequence
MLGRAVGSLA GNMVDQALIN GSSTTTGSHL SSARIGGASE GTALNRAYGT VRIGGTLIWA 
TRFEEKTTTE TSGSKSTGTK TKSYDYYGNL ALALCEGPVA AIRRVWADGE EVDLTEVEMR
FYPGSEDQGV DPLIAAKQGE GNAPAYRGVA YVVFERLPLD DYGNRLPVLQ FEVIRPLGRL
ESQVRAVTII PGATEHGYAT TAITEETGDG EERIINRNTL VAATDWQASL DELQAVCPNL
VRAALVVSWF GTDLRADQCA IVPGVEVARR DEESRAWNVA GIGRSQARLV SQSGGGPAYG
GTPSDKSVIE AIKDLNSRGI ATCLYPFVMM DIPSGNGLTD PYGGTEQAAY PWRGRITCSP
APDLAGSPDG TDAVDAIIEA FMGKTTVDDF FLLGTTILYT GNKNGRDSGY RRLVLHSALL
AKAAGGVDSF VIGSELKGLT TLRGADNSFP FVTALMQLAE DVRAILGSGT KLTYGADWSE
YFGYHPDDGS GDVFFHLDPL WACAAIDAVG IDNYMPLSDW NDADFTADNP DGFIIADDRA
AMQAQIAAGE GYDWYYPSLA ARKKRERAAI TDGLAGKPWV YRYKDIQSWW ENHHYNRVGG
VELSAPSAWM PKQKPIWFTE LGCPAVERGA NQPNVFPDPK SSENALPYFS SGMRSDAMQR
RFLEAHLGYW QGEAAPAGMV DADHIFLWTW DSRPFPAFPY DTDLFADGDN WRSGHWLNGR
LGGGTLAEVI AAILEDCGFT DYDVSAVTGD LSGYVQGDVS SARSLIEPLT EAFLIDVIED
GAVLRFRSRQ AASLKAVETR VFVDTEDEPF WTETRGDSTD YAGQAVLDFY DPANDYEDAS
VRSRRVVGTS AKLLSSDLPA VLDEASALAV VETQLRDHRI GRRSLTLSLS PSQLALQPGD
VLTLPDGPSG RFLITRIEDS STLSLELTEV AAPVSSAITV ASSGRVQSGR ASDGFAPLWR
LMDLPRLDDG EDGSFARAAA YASPWRKIVL SSSAETENYA TRAVVEGPAT LGTLSSALAA
GVSGRFDRAN RLSVTLSYGS FSSGSRLSVL NGDNRLVVKA ANDIWEVIGF QTADEVESGV
WQLSGLLRGL YGTEDAMAAG AVSGAQVVLL NSAVTALDLA DSEIGLTLNW IAEAAGTSLA
AKGPVSFSGG VRALTPLSPV HLRASRAPSG DIALSWVRRG RTDADNWTPS DIPLDEESER
YQLDILDAGK AVLLSVTLTS AAYTYSAELQ ATDFGVAPST LAIRVRQIGR HASGIAAEAQ
FTF