Gene Avi_1323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1323 
Symbol 
ID7389071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1109837 
End bp1111960 
Gene Length2124 bp 
Protein Length707 aa 
Translation table11 
GC content62% 
IMG OID643650743 
Productpenicillin binding protein 
Protein accessionYP_002548949 
Protein GI222147992 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.295305 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAAGA AAAAGCGGCA TATCTTTCTC AAACTCGACG CCTGGCTGGA TTCCACCTTA 
TGGAATACCG GCTTCCAGGC CGCCGAATTC TGGGAAGAAA CCACGATCTT CTTTCGCCGG
TTTCGGATGC GCGGTTGGAA GAAATGGCTG TTCGAGGCCC TGGGCGAAGC GATGACGCTG
GGAACCGCCG GTGCTGTCGT CATGCTGGCG CTGGCCATGC CCGCCTTTCA GGAAACGGTC
AAGGATTGGC GCAATCGCGG CGATTTCGCC GTCACCTTTC TGGATCGCTA CGGCAATGTC
ATCGGCCATC GCGGCATTAT CCATGAAAAT TCCGTGCCGT TCGAAGACCT GCCCGACAAT
CTGATCAAAG CGGTGCTGGC CACCGAAGAC CGGCGGTTTT TCGACCATTT CGGCATCGAT
TTCATCGGCC TTGGCCGGGC GCTCAGCGAA AATGCCAGAG CTGGCGGCGT GGTCCAAGGC
GGCTCGACGC TGACCCAGCA GCTCGCCAAG AACCTGTTTC TCACCAATGA GCGCTCCATC
GAGCGCAAGA TCAAGGAGGC CTTCCTGTCT CTATGGCTGG AGGCAAACCT CACGAAACAG
GAAATCCTGT CGCTCTATCT CGACCGCGCC TATATGGGCG GCGGCACATT CGGCGCGGCG
GCGGCCTCGC AATTCTACTT CGGCAAGAGC GTGCGCGACG TCAATCTGGC CGAGGCCGCC
ATGCTGGCGG GCCTGTTCAA GGCACCGGCC AAATATGCCC CGCATGTCAA CCTGCCCGCT
GCCCGTGGCC GCGCCAATGA AGTGTTGAGC AATCTGGTGC AAAGCGGCTT CATGAGCGAG
GGCCAGGTCA TCGCCGCCCG GCGCAATCCG GCCACCGTGG TTGATCGGGC CGAGCGCGAG
GCTCCGGACT TCTTCCTCGA CTGGGCGTTT GACGAAGTTC AGCGCATCGC CTCCCGCTTC
CCCGAACATT CGCTGATCGT GCGCACCACC ATCGATCCCG GCCTGCAAAA AGTCGCCGAA
ACCGCTGTCA GCAATACGTT GCGCGAATAT GGCGAACAAT ATAATGTCAA GCAGGCGGCC
CTCGTGACGC TGGAAAACGG CGGTGCGGTG CGCGCCATGG TCGGCGGACG CGATTACGGA
GAAAGCCAGT TCAACCGCGC CACGCGCGGC CTGCGCCAAC CCGGTTCCTC CTTCAAGATC
TACACCTATG CGGTGGCGAT GGAAGCGGGC CTGACCCCGG AGACCACCAT TGTCGATGGT
CCGGTCAATT GGGGCAATTG GAGCCCGCAT AATTACGGCA ACAGCTATGC CGGGCGCATT
ACCCTGACGA CCGCGCTGGC CAAATCGATC AACACCGTAC CAGTGAGGCT GGTCAAGGAC
CGGCTGGGCG TTGATTCCGT CATCCGCATG GCGAAAGCCA TGGGCGTGGA AACGCCGATC
CGCAAGGATG TCACCATTCC GCTCGGCACC TCGGAAGTCA CGGTCATGGA CCAGGCGACG
GCCTATGCCG TGCTGCCATC CGGGGGCCTG CAATCACGCC GCCATGGCAT TGTCGATGTC
AGAGACTATC GCGGCCATGT GCTCTACGAT TTCGACCGTG ACGAACCAGC CCCGCGCCGG
GTACTGACCG AGCAGGCCGA TAACTACATG AACCAGATGC TGACCAAGGT CCCCTATATC
GGCACCGGCC GAAAAGCCGC TCTCGATGGC ATTCTCACCG CTGGCAAGAG CGGCACGACG
CAAGCCTATC GCGATGCCTG GTTCGTCGGC TATACCGGCA ATTTCACAAC CGCTGTCTGG
TTCGGCAATG ACGATTACAC CTCCACCAAC AACATGACCG GCGGCTCGCT CCCCGCCATG
ACCTTCAAGA CCATCATGGA CTACGCCCAT CAGGGCGTCG CAGTGCGGCC AATCCCTGGC
GTACTGGAAC CGGCGACCGT AGCCGTAAAG GCCCCAGCAC CGGCCAAGGG CGAACCAAAG
GGCACCGCAC CCGCCCCCAC CCCACCCGAA TTCGTCCGCC CCCGGACACT CTCTGTCGAA
ACCACCGCCC TGCTGCGCCA GATCGGCACG ATGCTGACCG AGGCACAGCC GCTGGCGCCA
GCGCTGCGGG CGGCGCTGGA TTGA
 
Protein sequence
MQKKKRHIFL KLDAWLDSTL WNTGFQAAEF WEETTIFFRR FRMRGWKKWL FEALGEAMTL 
GTAGAVVMLA LAMPAFQETV KDWRNRGDFA VTFLDRYGNV IGHRGIIHEN SVPFEDLPDN
LIKAVLATED RRFFDHFGID FIGLGRALSE NARAGGVVQG GSTLTQQLAK NLFLTNERSI
ERKIKEAFLS LWLEANLTKQ EILSLYLDRA YMGGGTFGAA AASQFYFGKS VRDVNLAEAA
MLAGLFKAPA KYAPHVNLPA ARGRANEVLS NLVQSGFMSE GQVIAARRNP ATVVDRAERE
APDFFLDWAF DEVQRIASRF PEHSLIVRTT IDPGLQKVAE TAVSNTLREY GEQYNVKQAA
LVTLENGGAV RAMVGGRDYG ESQFNRATRG LRQPGSSFKI YTYAVAMEAG LTPETTIVDG
PVNWGNWSPH NYGNSYAGRI TLTTALAKSI NTVPVRLVKD RLGVDSVIRM AKAMGVETPI
RKDVTIPLGT SEVTVMDQAT AYAVLPSGGL QSRRHGIVDV RDYRGHVLYD FDRDEPAPRR
VLTEQADNYM NQMLTKVPYI GTGRKAALDG ILTAGKSGTT QAYRDAWFVG YTGNFTTAVW
FGNDDYTSTN NMTGGSLPAM TFKTIMDYAH QGVAVRPIPG VLEPATVAVK APAPAKGEPK
GTAPAPTPPE FVRPRTLSVE TTALLRQIGT MLTEAQPLAP ALRAALD