Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1323 |
Symbol | |
ID | 7389071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1109837 |
End bp | 1111960 |
Gene Length | 2124 bp |
Protein Length | 707 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643650743 |
Product | penicillin binding protein |
Protein accession | YP_002548949 |
Protein GI | 222147992 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.295305 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAGA AAAAGCGGCA TATCTTTCTC AAACTCGACG CCTGGCTGGA TTCCACCTTA TGGAATACCG GCTTCCAGGC CGCCGAATTC TGGGAAGAAA CCACGATCTT CTTTCGCCGG TTTCGGATGC GCGGTTGGAA GAAATGGCTG TTCGAGGCCC TGGGCGAAGC GATGACGCTG GGAACCGCCG GTGCTGTCGT CATGCTGGCG CTGGCCATGC CCGCCTTTCA GGAAACGGTC AAGGATTGGC GCAATCGCGG CGATTTCGCC GTCACCTTTC TGGATCGCTA CGGCAATGTC ATCGGCCATC GCGGCATTAT CCATGAAAAT TCCGTGCCGT TCGAAGACCT GCCCGACAAT CTGATCAAAG CGGTGCTGGC CACCGAAGAC CGGCGGTTTT TCGACCATTT CGGCATCGAT TTCATCGGCC TTGGCCGGGC GCTCAGCGAA AATGCCAGAG CTGGCGGCGT GGTCCAAGGC GGCTCGACGC TGACCCAGCA GCTCGCCAAG AACCTGTTTC TCACCAATGA GCGCTCCATC GAGCGCAAGA TCAAGGAGGC CTTCCTGTCT CTATGGCTGG AGGCAAACCT CACGAAACAG GAAATCCTGT CGCTCTATCT CGACCGCGCC TATATGGGCG GCGGCACATT CGGCGCGGCG GCGGCCTCGC AATTCTACTT CGGCAAGAGC GTGCGCGACG TCAATCTGGC CGAGGCCGCC ATGCTGGCGG GCCTGTTCAA GGCACCGGCC AAATATGCCC CGCATGTCAA CCTGCCCGCT GCCCGTGGCC GCGCCAATGA AGTGTTGAGC AATCTGGTGC AAAGCGGCTT CATGAGCGAG GGCCAGGTCA TCGCCGCCCG GCGCAATCCG GCCACCGTGG TTGATCGGGC CGAGCGCGAG GCTCCGGACT TCTTCCTCGA CTGGGCGTTT GACGAAGTTC AGCGCATCGC CTCCCGCTTC CCCGAACATT CGCTGATCGT GCGCACCACC ATCGATCCCG GCCTGCAAAA AGTCGCCGAA ACCGCTGTCA GCAATACGTT GCGCGAATAT GGCGAACAAT ATAATGTCAA GCAGGCGGCC CTCGTGACGC TGGAAAACGG CGGTGCGGTG CGCGCCATGG TCGGCGGACG CGATTACGGA GAAAGCCAGT TCAACCGCGC CACGCGCGGC CTGCGCCAAC CCGGTTCCTC CTTCAAGATC TACACCTATG CGGTGGCGAT GGAAGCGGGC CTGACCCCGG AGACCACCAT TGTCGATGGT CCGGTCAATT GGGGCAATTG GAGCCCGCAT AATTACGGCA ACAGCTATGC CGGGCGCATT ACCCTGACGA CCGCGCTGGC CAAATCGATC AACACCGTAC CAGTGAGGCT GGTCAAGGAC CGGCTGGGCG TTGATTCCGT CATCCGCATG GCGAAAGCCA TGGGCGTGGA AACGCCGATC CGCAAGGATG TCACCATTCC GCTCGGCACC TCGGAAGTCA CGGTCATGGA CCAGGCGACG GCCTATGCCG TGCTGCCATC CGGGGGCCTG CAATCACGCC GCCATGGCAT TGTCGATGTC AGAGACTATC GCGGCCATGT GCTCTACGAT TTCGACCGTG ACGAACCAGC CCCGCGCCGG GTACTGACCG AGCAGGCCGA TAACTACATG AACCAGATGC TGACCAAGGT CCCCTATATC GGCACCGGCC GAAAAGCCGC TCTCGATGGC ATTCTCACCG CTGGCAAGAG CGGCACGACG CAAGCCTATC GCGATGCCTG GTTCGTCGGC TATACCGGCA ATTTCACAAC CGCTGTCTGG TTCGGCAATG ACGATTACAC CTCCACCAAC AACATGACCG GCGGCTCGCT CCCCGCCATG ACCTTCAAGA CCATCATGGA CTACGCCCAT CAGGGCGTCG CAGTGCGGCC AATCCCTGGC GTACTGGAAC CGGCGACCGT AGCCGTAAAG GCCCCAGCAC CGGCCAAGGG CGAACCAAAG GGCACCGCAC CCGCCCCCAC CCCACCCGAA TTCGTCCGCC CCCGGACACT CTCTGTCGAA ACCACCGCCC TGCTGCGCCA GATCGGCACG ATGCTGACCG AGGCACAGCC GCTGGCGCCA GCGCTGCGGG CGGCGCTGGA TTGA
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Protein sequence | MQKKKRHIFL KLDAWLDSTL WNTGFQAAEF WEETTIFFRR FRMRGWKKWL FEALGEAMTL GTAGAVVMLA LAMPAFQETV KDWRNRGDFA VTFLDRYGNV IGHRGIIHEN SVPFEDLPDN LIKAVLATED RRFFDHFGID FIGLGRALSE NARAGGVVQG GSTLTQQLAK NLFLTNERSI ERKIKEAFLS LWLEANLTKQ EILSLYLDRA YMGGGTFGAA AASQFYFGKS VRDVNLAEAA MLAGLFKAPA KYAPHVNLPA ARGRANEVLS NLVQSGFMSE GQVIAARRNP ATVVDRAERE APDFFLDWAF DEVQRIASRF PEHSLIVRTT IDPGLQKVAE TAVSNTLREY GEQYNVKQAA LVTLENGGAV RAMVGGRDYG ESQFNRATRG LRQPGSSFKI YTYAVAMEAG LTPETTIVDG PVNWGNWSPH NYGNSYAGRI TLTTALAKSI NTVPVRLVKD RLGVDSVIRM AKAMGVETPI RKDVTIPLGT SEVTVMDQAT AYAVLPSGGL QSRRHGIVDV RDYRGHVLYD FDRDEPAPRR VLTEQADNYM NQMLTKVPYI GTGRKAALDG ILTAGKSGTT QAYRDAWFVG YTGNFTTAVW FGNDDYTSTN NMTGGSLPAM TFKTIMDYAH QGVAVRPIPG VLEPATVAVK APAPAKGEPK GTAPAPTPPE FVRPRTLSVE TTALLRQIGT MLTEAQPLAP ALRAALD
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