Gene Avi_1313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1313 
Symbol 
ID7387674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1103274 
End bp1103915 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content54% 
IMG OID643650735 
Producttranscriptional regulator TetR family 
Protein accessionYP_002548941 
Protein GI222147984 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCATGG CAAAGCGATT GAAAACGATC AGCCGGGCCG AGCAGAAAGC GAGGCGCCCG 
CAGGAAATAT TGGAAGCTGC ATTTGAAGAG TTTCTGGACA AAGGTTTTTC TGCGACGCGT 
GTGGAAGATG TAGCTCTGCG GCTCGGCATT ACAAAGGGCA CGGTTTATCT TTATTTTCCG 
TCAAAGGAGG TGTTGTTCGA GGAGAGCATC CGGCAGATGT CGCTGCCGTT GTCCCAATTG 
CGTGCTTCTG CTGAAACATT GGAGGGCAGC TATGCCGAAC GATTGAAGCA GATGATCGGC 
ATGGCCTATG AGATGATCGC TGGTGATTGC AAGTGTAGCG AACTCCTGCG TCTGACGGTG 
AGCGAGGGGA CCCGCTTTCC CCATATTGTA GACAGGCATT ACGACGAATT CGTTGCGCCT 
CTGTTGAAAA CGGTCTGCAT GCTGGTGGAG GGGGGCGTCG CCGCCGGCGA ATTTTTGCCA 
GGCCCGGCCG TTTCCGCTCC CGATGTTCTG ATTGGGCCGG TCATCCACTT CAATCTCTGG 
TCAATTCTGT TTGCGCAACG CAGACCACTT GACCAAAAGG CCTACATGGA AGCCCATATC 
GATATGGTGA TGCAGACCCT GATGCGCGGC AAGGGCGAAT AA
 
Protein sequence
MVMAKRLKTI SRAEQKARRP QEILEAAFEE FLDKGFSATR VEDVALRLGI TKGTVYLYFP 
SKEVLFEESI RQMSLPLSQL RASAETLEGS YAERLKQMIG MAYEMIAGDC KCSELLRLTV 
SEGTRFPHIV DRHYDEFVAP LLKTVCMLVE GGVAAGEFLP GPAVSAPDVL IGPVIHFNLW 
SILFAQRRPL DQKAYMEAHI DMVMQTLMRG KGE