| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1311 |
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| Symbol | |
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| ID | 7387673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1102027 |
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| End bp | 1103100 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643650734 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002548940 |
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| Protein GI | 222147983 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGGTTAC AAACGACTTT ATCCGGACTG GCTTGCGTCC TGCTCGCTTT GTGTCTGGCA
GGCTGCAATG AAAAGACCGA GAGCCAGTCT TCACCGCGCA GTGTCACGGT GACCAAGGCC
CAAACCGCGC AATACCAGCC CTCGGTGGAA ATCTCCGGAT CGGTGAAAGC GCGGGTGCAG
TCCGACCTGT CGTTCCGTAC CGCAGGCCGG GTGATCGAGA GGCATGTCGA TGTCGGCGAC
CGGGTCAAGG CGGGCGACGT TCTGGCACTC CTCGACAATA CCGAGCAGAA GGCTGATATC
GCCGTTGCCC AGGCCGGGCT GGAATCGGCC CAGGCAACGA TGCGCCAAAA GAAATTGGCC
TTCGACCGCT ACAAGGTACT GATCCAGACC AACACCATTG CCCAATCCAC CTTCGACCAG
GCCCGAGAGG ATCTCGCCAC GGCTCAAGGC TCGCTGCAAA CCGCGCAGGC CAATCTGGCC
ACCGCCCAGG ATGCGATGAC CTATACGGAG TTGAAGGCCG ATGCCGATGG CATCATTACC
TCGCGCAGCA TCGAGGTGGG ACAGGTGGTT TCGGCGGCGC AGGCGGCCCT GACGCTTGCC
CATGACGGAC CGCGCGATGC CGTATTCGAT ATGTTCGAAG CGTTTTTCCT GGAAGGTGCG
CCGTCCGATA CCGTCGAGGT CTCGCCGATC GGCGGCCGCG CCAATCCCCA GGACGGCAAG
ATCCGCGAAG TCTCTCCGGC CATCGACACC AGCGCCGGCA CCATCCGTAT CAAGGTCGCC
CTGCCCGCGG ACACGCAATG GTCGCTCGGC ACGACTGTCG TCGGACGGTT CCGCGCCCAG
CCGCAACAGG GCATCGTGCT CCCCTGGAGC GCCATGGCCT CGGCCAATGG CCAGCCCGCC
GTCTGGGCGG TCAACACCGC CGACAGCTCC GTCAGGCTGC GCAAAATCGA CATTGCCCGC
TACCGCGTCG GCGATTTCGT GGTGGCATCC GGCGTCGCGC CCGGGGACAT CATCGTCACC
GACGGCGGCA AGTTTCTGAC GGACGGCCAG GTCGTAGCCT TTAAGGAAAA GTGA
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| Protein sequence | MRLQTTLSGL ACVLLALCLA GCNEKTESQS SPRSVTVTKA QTAQYQPSVE ISGSVKARVQ
SDLSFRTAGR VIERHVDVGD RVKAGDVLAL LDNTEQKADI AVAQAGLESA QATMRQKKLA
FDRYKVLIQT NTIAQSTFDQ AREDLATAQG SLQTAQANLA TAQDAMTYTE LKADADGIIT
SRSIEVGQVV SAAQAALTLA HDGPRDAVFD MFEAFFLEGA PSDTVEVSPI GGRANPQDGK
IREVSPAIDT SAGTIRIKVA LPADTQWSLG TTVVGRFRAQ PQQGIVLPWS AMASANGQPA
VWAVNTADSS VRLRKIDIAR YRVGDFVVAS GVAPGDIIVT DGGKFLTDGQ VVAFKEK
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