| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1309 |
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| Symbol | |
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| ID | 7387672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1100931 |
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| End bp | 1102025 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643650733 |
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| Product | efflux protein |
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| Protein accession | YP_002548939 |
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| Protein GI | 222147982 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCTCT ACCGTCCAAT CATCACCCTT CCCTTTCTGC TTGCCCTGGC GCTTGCCGCC
GGTTGCAGCC AGGAGGACGA CCAGCAGGCC GCCGGGCCAC GTCCTGTCCG CTCGATGACC
GTCAAGGCCG AGCGCCTGTC GGGGGTCAGC TTTGCCGGTG TCGTCCAGGC GCGGGTCGAA
ACCGATCTTG CCTTCCGCAC GCTCGGCCGA GTGATCCTGC GCAAGGCCGA AGTCGGCGAT
CTCGTCCACA AGGGCGACGT GGTTGCCGAA ATCGATCCGC TGGCGCTGCA ATTTGCCGTC
AACAGCGCCG AGGCCGACCT GCGCAATGCC CAGGCGGCCT TTGAGAATGC GCAGATTACC
GAAAAGCGCC GGCGCACACT CGCCACCATC AATGCCGGCA GCGTCGCCGA TTTCGAAGTG
GCCGAACAGG GCCTGAAATC GGCCCAGGCA AGTCTCGACC AGGCAAATGC CAAGCTGGAC
AAGGCCCGCG AGCAATTGGG GTATGCGCGG CTTCAGGCGG AATTCGACGG CGTCGTCACG
TCAGTGTCCG TCGAAGTCGG CCAGACAGTG ACCGCCGGGC AGACGGTGAT GAAAGTCGCG
CGGCTGGACC AGCGTGACGT GATCGTCGAT GTCCCGGAAG GACGGATCGG CGCGCTGAAG
GAAGGCACGA AGTTCAACGT GGCGCTACAG CTCGATCCCA CCAAGCAGGC CATCGGCACG
CTGCGCGAAA TCGGCCCCGA AGCCGATGCG GAAACCCGCA CCCACCGGCT GAAGATCGCC
ATCAACGACG CCCCCGAGGT CTTTCGTCTC GGCGCCGTGG TGACCGCGAC CGCAAGCCGT
GATGAAGAGG ACGGCGTCAT CCTGCTGCCG TTGACCGCCA TCCTCAAAAA AGACGGCGCA
ACCGGTGTCT GGGTGATCGA TCGGGCCAAT GCCTCGGTCG CCCTGCGCAA GGTTGTCCTT
GATGACGCCA CCACCGATGG CAACCGGGTG AAGGTCCTGT CCGGCTTGAA GGAAGGCGAG
CAGGTTGCCG TCGCCGGCGC CAATCAGCTT GCCGAGGGAC AAAAGATCAA GACCGATGAG
GAGCCGCGCC CGTGA
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| Protein sequence | MRLYRPIITL PFLLALALAA GCSQEDDQQA AGPRPVRSMT VKAERLSGVS FAGVVQARVE
TDLAFRTLGR VILRKAEVGD LVHKGDVVAE IDPLALQFAV NSAEADLRNA QAAFENAQIT
EKRRRTLATI NAGSVADFEV AEQGLKSAQA SLDQANAKLD KAREQLGYAR LQAEFDGVVT
SVSVEVGQTV TAGQTVMKVA RLDQRDVIVD VPEGRIGALK EGTKFNVALQ LDPTKQAIGT
LREIGPEADA ETRTHRLKIA INDAPEVFRL GAVVTATASR DEEDGVILLP LTAILKKDGA
TGVWVIDRAN ASVALRKVVL DDATTDGNRV KVLSGLKEGE QVAVAGANQL AEGQKIKTDE
EPRP
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