| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1308 |
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| Symbol | |
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| ID | 7387671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1097824 |
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| End bp | 1100934 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650732 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_002548938 |
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| Protein GI | 222147981 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGAAAT TTAACCTGTC GGACTGGGCG CTCGAACATC GTTCCCTCGT CTGGTATTTC
ATGATGGTGT TTTCGCTGGC CGGCGTGCTC GCTTATATCG GCCTTGGGCG TGAGGAAGAC
CCGTCCTTCA CCATCAAGAC CATGGTGATT CAGGCCCAAT GGCCCGGCGC CTCCGCCCAG
GAGGTCACCC AGCAGATCAC CGACCGGATC GAGAAGAAGC TGCAGGAACT GGAATCGCTC
GACTATACTA GGTCGATCAC CACGGCGGGC CAGACCATCG TCTTCGTCAA CCTGCTGGAT
ACCACCAAGG CCCGCGACGT GCCCGCCACA TGGCTGCGCG TGCGCAACAT GGTCCAGGAT
GTCCAGGGGG ACTTTCCCTC CGGCGTCGTC GGGCCGTTTT ACAACGACCG TTTCGGCGAC
GTTTACGGCA ATATCTACGC CTTCACCAGC GATGGCCTGA CCCATCGGCA ATTGCGCGAC
CTGGTCGAGA GCGCCCGCAC CAAGCTGCTG ACCGTTCCCA ATATCGGCAA GGTCGACATT
GTCGGCACGC AGGACGAGGC GATCTACCTC GAATTTTCCA CCCGCAAGAT TGCTGCCCTC
GGCATCGACC AATCGGCGAT CATCGCCACG CTTCAGGCCC AGAATGCCGT CACCCAGTCA
GGCTTCATCG ATGCCGGGCC GGAGCGGATC GCGCTTCGCG TCGGCGGGCG CTTTATTTCG
GAAGACAGCC TGCGGTCGAT CAATCTCAAG GTCAACGACC GGTTCTTTCC GCTGACCGAT
GTCGCCACCA TTAGCCGTGG CTATGCCGAT CCACCGACCA GCATGTTCCG GGTCAATGGC
AAGCCGGCAA TCGGTCTTGC GATCGGCATG AAGGCTGGTG CCAATCTGGT GAATTTCGGC
AAGGCGCTGG ACAAGACCAT GGCCGGCGTC ATCCAGGACC TGCCGGTCGG CGTGTCCGTC
GATCGGGTCG CCGATCAGCC GGCGGTGGTG GAGGAAGCGG TTTCCAGCTT CACCCATGCG
CTGTTCGAGG CAATCGTCAT CGTGCTGGCC ATCAGCTTCA TCAGCCTTGG CCTGCGCGCC
GGACTGGTGG TGGCGATCTC GATCCCGCTG GTTTTGGCGA TCACCTTCCT GTTCATGCAA
TATGCCGGCA TATCGCTGCA ACGCATCTCG CTCGGCGCCT TGATCATCGC GCTCGGGCTT
CTGGTCGACG ATGCGATGAT TGCCGTGGAA ATGATGGTGG CACGGCTGGA AGTGGGCGAC
AGCCTGCGCA AGGCCGCCAC CCATGTCTAT ACCTCGACCG CCTTTCCAAT GCTGACGGGA
ACGCTCGTCA CCGTCGCCAG CTTCATCCCG GTCGGGTTGA ACAACAGCAA TGCGGGCGAA
TTCACCTTCT CGCTGTTCGT CGTTATCGCC GTGTCACTGG TGGTGTCCTG GGTGGTGGCT
GTGCTGTTCA CGCCACTTCT GGGCGTCACC ATGCTGCCGA AGACCATGAA GAAGCATGCC
GACCACAAGG GCTGGTTTGC CCGGCTGTTT GCCAGCATGC TCCACTTTTG CCTGCGCTGG
CGCTGGCTGA CCATCGTTGC AACGATCGGC GCCTTCGCCC TGTCGCTCTA TGGCATGACC
CATGTGCAGC AGCAATTCTT CCCCAGCTCC GACCGCCCGG AACTGATCGT CGACTGGAAC
CTGCCGCAAA ACAGCTCCAT CGACGAAACC AACCGGCAGA TGGCCAAGTT TGAACAGGAG
CAATTGGCCA ACAACCCTGA TATCGACCAT TGGTCGACCT ATGTCGGTCG CGGTGCACCG
CGCTTCATCC TGTCGTTCGA TGTGCAGCCT GATGATATCA CCTTCGGCCA GATGATCATC
GTCACCAAAG GGCTGGACGT GCGCGACAAG CTGCGCCAAG AGTTCCAGGC CTATCTCAGC
CAAACCTTCC CCGGCACCGA TGCCTATGTG AAGCTGCTGG ATATCGGACC TCCGGTCGGC
AAGCCGGTGC AATACCGCGT ATCCGGTCCC GACATCCAGA AGGTGCGCGA TTATGCTGGC
AAACTGGCCG CCATTGTCGG CACCCACCCG CTACTCACCA ATATCGCCTT CAACTGGTAT
GAGCCGGCCC GCGTGCTGAA GGTAGATGTG TTGCAGGACA AGGCCCGCCA ACTGGGTGTC
ACCTCCGAAG ACATCGCCCA GACCCTCAAC AGAGTGGTCG AAGGATCGAC GGTCACCAAG
GTCAGGGACG ACATCTACCT GATTGATGTC GTCAGCCGTG CCGAAAAGAA GGATCGCGGT
TCCGTCGAAA CCTTGGTCGA CCTGCAATTG CCAAGCAGCA ACGGTCAGTC TATCCCGCTG
TCGTCGGTCG CCACCTTCCA TTACGAACTG GAGCAGCCGA CCATCTGGCG GCGCGACCGC
ATGCCTACAA TCACCATCGA AGCCGCCGTC AACGGCCCCA CCCAGCCCGC GACCATCGTC
AACGCGCTGA GCGGCAAGGT CACCGAGTTC GCCAAGACGC TTCCGGCAGG CTATGCCGTC
AATATCGGCG GCGCCGTCGA GGAGAGCAGC AAGTCGCAAG GGCCGATCGT CCAGGTCGCA
CCCCTGATGC TGTTCATCAT GGCAACGCTG CTGATGATCC AGTTGCAGAG CTTCCACCGG
CTGTTCCTGG TGTTTTCCGT CGCGCCGCTG GCGCTGGTCG GCGTGGTGAT CGCGCTTCTC
ACCAGCAACG CGCCTCTTGG CTTCGTGGCG CTGCTCGGCG TGCTCGCGCT GATCGGCATC
CTGATCCGAA ACTCTGTCAT CCTGGTGGTG CAGATCGAGG ATCTGCGAAA ATCGGGCGTT
GCGGCCTTTG CGGCGGTGGT CGAGGCCACC GAACACCGAA TGCGCCCGAT CATGCTGACT
GCCGCCGCTG CCACGCTGGC GCTGATCCCG ATCTCGCGGC AGATCTTCTG GGGACCGATG
GCCTTTGCCA TGATGGGCGG CATCGTCGTC GGAACGGTGC TGACCCTGCT GTTCCTGCCC
GCGCTGTACA TCACCTGGTT CCGGATCAAA CCGGAGAAAA ACCCGACGCA CGACAAGCAC
GTCCCCGATG CCCATGCTCC CGATAACAAT GCTATCGGAG CTGAGAAATA G
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| Protein sequence | MKKFNLSDWA LEHRSLVWYF MMVFSLAGVL AYIGLGREED PSFTIKTMVI QAQWPGASAQ
EVTQQITDRI EKKLQELESL DYTRSITTAG QTIVFVNLLD TTKARDVPAT WLRVRNMVQD
VQGDFPSGVV GPFYNDRFGD VYGNIYAFTS DGLTHRQLRD LVESARTKLL TVPNIGKVDI
VGTQDEAIYL EFSTRKIAAL GIDQSAIIAT LQAQNAVTQS GFIDAGPERI ALRVGGRFIS
EDSLRSINLK VNDRFFPLTD VATISRGYAD PPTSMFRVNG KPAIGLAIGM KAGANLVNFG
KALDKTMAGV IQDLPVGVSV DRVADQPAVV EEAVSSFTHA LFEAIVIVLA ISFISLGLRA
GLVVAISIPL VLAITFLFMQ YAGISLQRIS LGALIIALGL LVDDAMIAVE MMVARLEVGD
SLRKAATHVY TSTAFPMLTG TLVTVASFIP VGLNNSNAGE FTFSLFVVIA VSLVVSWVVA
VLFTPLLGVT MLPKTMKKHA DHKGWFARLF ASMLHFCLRW RWLTIVATIG AFALSLYGMT
HVQQQFFPSS DRPELIVDWN LPQNSSIDET NRQMAKFEQE QLANNPDIDH WSTYVGRGAP
RFILSFDVQP DDITFGQMII VTKGLDVRDK LRQEFQAYLS QTFPGTDAYV KLLDIGPPVG
KPVQYRVSGP DIQKVRDYAG KLAAIVGTHP LLTNIAFNWY EPARVLKVDV LQDKARQLGV
TSEDIAQTLN RVVEGSTVTK VRDDIYLIDV VSRAEKKDRG SVETLVDLQL PSSNGQSIPL
SSVATFHYEL EQPTIWRRDR MPTITIEAAV NGPTQPATIV NALSGKVTEF AKTLPAGYAV
NIGGAVEESS KSQGPIVQVA PLMLFIMATL LMIQLQSFHR LFLVFSVAPL ALVGVVIALL
TSNAPLGFVA LLGVLALIGI LIRNSVILVV QIEDLRKSGV AAFAAVVEAT EHRMRPIMLT
AAAATLALIP ISRQIFWGPM AFAMMGGIVV GTVLTLLFLP ALYITWFRIK PEKNPTHDKH
VPDAHAPDNN AIGAEK
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