| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1295 |
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| Symbol | |
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| ID | 7387661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1083647 |
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| End bp | 1084864 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650722 |
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| Product | efflux protein |
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| Protein accession | YP_002548928 |
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| Protein GI | 222147971 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCGTA AACTGTTCGC AGTCGTTGTC ATCGTCGTTC TGGTGCTTGC CGCCGTTGGC
TTCACTCTGT TCAAGCGTTC CGAGGCCAAT CCGACCGATG GGCTGCTGCT GGCGGCGGTC
AAACGGGGAG ATGTGGAGGA AACGGTGCTT GCCACGGGCA TCTTCAAGCC GTCCCGGCTG
GTTGCTGTCG GTGCCCAGGT GTCCGGCCGT ATCACGGCCC TGCATGTGAA AGTTGGCGAC
ACGATCAAGA AGGACAGCCT GGTCGCCGAG ATCGACTCGG TCACCCAGGT CAACGACCTG
CGTACCTCGA AAGCCTCGCT GGCCGATATC AAGGCCCAGA AGGAAGAGGC CGAGGCGACC
CTGGTCAGCG CCGAACTGGC ATTGGTGCGC CAGCAGAATT TGCGGGCCAG CAATTCCGGC
ACCCAGGCCG ATCTTGAAAG CGCGGTTGCC ACCCGCGACA AGACCAAGGC GCAGATCGAC
AGCCTTCAGG CGCAGATCGT CAAGGCTGAA GTCGCCGTGG AAACCTCCGA GGCCGATCTC
GGCTATACCC GCATCACCGC GCCCATGGAT GGCACGGTTC TGGCCGTGGT CAACCAGCAG
GGCCAGACCG TCAATGCCAC GCAATCGGCA CCCACCATCG TTATCCTGGG CGATCTGAAC
CAGATGATCG TGCGGGCGGA AATCTCCGAG GCCGATGTGG TCAATGTCAG GCCGGGGCAG
GCGGTCTATT TCAACATTCT CGGCCAGCCT TCCGTCCGCC ATGAGTCGGT GCTGAAATCC
ATCGAGCCCG CGCCGGAATC GATCACCAGT GATAGCAGCG TCTCGACTTC GTCCAGTTCC
AGCTCGTCCA GCAGTTCCTC CAGCACATCA TCTTCGGCCA TCTATTATAA CGGCATCCTG
GACGTCGATA ATTCTGATGG GCGGTTTCGC ACCTATATGA CGGCGGAAGT GCATGTCGTG
CTTGGCGCGG CGAAGAATGT GCTGACGGTG CCGGCCTCGG CACTCGGCTC CGGCGTCAAG
ACCGGCAAGG CCAGTCTGCG GGTCGTGGGC GCCGATAATA CGATTGTCAC TCGACCGGTG
GAAATCGGCC TGAATGACGG GGTCAATGCC GAGGTGAAAT CGGGCTTGAG CGAAGGGGAG
AAGATCGTTA TCGGCCAAGC CGATCCTTCC GCCAGATCGG CACCTGGGGG CTTTGGGCCG
CCGCCCGGGG GGATGTGA
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| Protein sequence | MSRKLFAVVV IVVLVLAAVG FTLFKRSEAN PTDGLLLAAV KRGDVEETVL ATGIFKPSRL
VAVGAQVSGR ITALHVKVGD TIKKDSLVAE IDSVTQVNDL RTSKASLADI KAQKEEAEAT
LVSAELALVR QQNLRASNSG TQADLESAVA TRDKTKAQID SLQAQIVKAE VAVETSEADL
GYTRITAPMD GTVLAVVNQQ GQTVNATQSA PTIVILGDLN QMIVRAEISE ADVVNVRPGQ
AVYFNILGQP SVRHESVLKS IEPAPESITS DSSVSTSSSS SSSSSSSSTS SSAIYYNGIL
DVDNSDGRFR TYMTAEVHVV LGAAKNVLTV PASALGSGVK TGKASLRVVG ADNTIVTRPV
EIGLNDGVNA EVKSGLSEGE KIVIGQADPS ARSAPGGFGP PPGGM
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