| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1282 |
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| Symbol | mnhD |
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| ID | 7387653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1074909 |
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| End bp | 1076513 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650714 |
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| Product | putative monovalent cation/H+ antiporter subunit D |
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| Protein accession | YP_002548920 |
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| Protein GI | 222147963 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.819493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGTTT CAACCACCAA TGCCGAGGCT CTAAATGCCG CCCTGGCCGC CGCTTATGTG
CAGGCGCCGA CCACGCCTGC GCAGTGGCTG CCGATCCTGC CGGTGGCCCT GTGTCTCGCC
GGTGGGGCCG TGGCCTTGAT GCTGCGTGAT CGCACCCGCC TTCAGCCGAT GATTGCCCTT
CCCACCCTGG TGCTGCTGGT ACTGATCGAT CTGGCACTGC TGGTTCAGGT GGTGCAGAAT
GGCCCGCTGA CGGTGATGAT GGGCCGCTGG ATGCCGCCCT TCGGCATTGC CTTCACTGTC
GATATCGTCG GGGCGCTGTT TGCCCTGGCG TCTGCCATCG TCGCCTTGGC CTGCGGCGTC
TATGGACTGA CGGATGTCAA TACCTCCGGT CGCCGCTATG GTTTCTATCC GTTTCTTCTG
GTGCTGATGG CCGGGGTGTC CGGCGCCTTT CTGACAGGCG ATATCTTCAA CCTCTATGTC
TGGTTCGAAG TGCTGCTGAT CTCGTCTTTC GGCATGCTGA TCCTCGGCTC CGAGCGCGAA
CAGATCGACG GGGCACTGAA ATATGCGGTG CTCAACCTGA TCGCCACCAC GCTGTTTCTG
ATCACCATCG GTTTTCTCTA TGCCAGTTTC GGCACGCTCA ACATGGCCGA TATCGCCCGC
AAGGCCGATG GTTTGCGCGA TACCGCCCCG CTGATGACGC TGACCACGCT GTTTGCCCTG
GCCTTTGCCA TGAAAGCCGC TGCCTTTCCG CTGAATTTCT GGTTGCCTGC CTCCTATCAC
ACGCCACGCA TCGTGGTGTC GGCGCTGTTT GCCGCCCTGC TGACCAAGGT CGGCATTTAC
AGCCTGCTGC GGGTCGTGGT GATGCTGTTT CCGATTGAGC GCGAGGCGCT GAGCCTGGTG
CTGGGGGTGA TTGCCGCCGC CACCATGATT CTGGGTGCCG TAGGTGCCCT CGGCCAGTCT
GACATCCGCC GGCTGATGGG CTTTATCGTC ATTTCCGGCA TCGGCATCAT GCTGGCCGGT
ATCGCCATTG GCGCCGTACA GGGCATCAGC GCAACGATCT TCTATGCCAT GCACTCAATC
ATGCTGATGG CGGCGTTGTA TCTGGTGGTA GGCCAGGCCG GGCGGATGAC TGGTAGTTTT
GCATTACAAG ACATGTCCGG TCTCTATAAA GCAGCACCGG GCTTTTCCTT TCTGGCGCTG
GCGCTGTTTT TCGCTGCAAG TGGCCTGCCG CCGTTTTCCG GATTCTGGCC AAAGGTCATG
CTGCTGAAGG CGGCACTGGA TATCGGCGCC TGGTGGATGG CTGGCGCAAT CCTGTTGTCC
GGCTTCCTGA CCACGATTGC GCTGGCCCGG GTCTTCCTGC TGGCCTTCTG GCGCACCCAG
CCAGCCAAGG GCGAATCAGA GGGGAACACC AACCAGGCCG GACCAGAGAT CCTTACCGCG
CCAACGCTCT CAGCCCTTGC CCCGATCGTG CTGCTGGCCG GTTTCATCGT CTGGTTCGGG
CTGTTTCCTG AAAAGCTGAT TGCACTCTCG CAGGACGCCG CAGTCGGGCT TGTCGATCCA
TCGGCCTATA TCACCTCGGT CTTTCCCACG GAGGCGCGCC CATGA
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| Protein sequence | MAVSTTNAEA LNAALAAAYV QAPTTPAQWL PILPVALCLA GGAVALMLRD RTRLQPMIAL
PTLVLLVLID LALLVQVVQN GPLTVMMGRW MPPFGIAFTV DIVGALFALA SAIVALACGV
YGLTDVNTSG RRYGFYPFLL VLMAGVSGAF LTGDIFNLYV WFEVLLISSF GMLILGSERE
QIDGALKYAV LNLIATTLFL ITIGFLYASF GTLNMADIAR KADGLRDTAP LMTLTTLFAL
AFAMKAAAFP LNFWLPASYH TPRIVVSALF AALLTKVGIY SLLRVVVMLF PIEREALSLV
LGVIAAATMI LGAVGALGQS DIRRLMGFIV ISGIGIMLAG IAIGAVQGIS ATIFYAMHSI
MLMAALYLVV GQAGRMTGSF ALQDMSGLYK AAPGFSFLAL ALFFAASGLP PFSGFWPKVM
LLKAALDIGA WWMAGAILLS GFLTTIALAR VFLLAFWRTQ PAKGESEGNT NQAGPEILTA
PTLSALAPIV LLAGFIVWFG LFPEKLIALS QDAAVGLVDP SAYITSVFPT EARP
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