Gene Avi_1271 details

Gene Information

• Locus tag: Avi_1271
• ID: 7387644
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1068026
• End bp: 1068676
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650705
• Product: Hemolysin III
• Protein accession: YP_002548911
• Protein GI: 222147954
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGAGT TCCGCTTCGG GCGACACTAT GATTTTCACG AATTGCTGGC CGATGGCATT 
GTGCATGGTG TCGGCGTGGT GTTTGCGCTG GTTGGTGTCA CGGCGCTGAT TTTCTATGCC 
ACGGTGTTTA CCAGCTTTGG CGAGATTGCC GCCAGCTGGA TCTATGGCCT TGGCCTGGTA 
TTGGCGCTGG GCTGTTCCTT CACCTACAAT ATGTGGCCGC GCTCGACCTT CAAGACCTAT 
CTGCGGCGGC TGGATCATTC GGCGATTTTC GTGCTGATCG CCGCAACCTA TACACCCTTT 
CTGGAACGCG GCGCCGATGA ACCGGCCATT CTTTGTCTGT TGATCGGCAT CTGGCTGACG 
GCGATAACAG GTATCTTCCT GAAATGCCGC TATCCTGGCC GCTACGACCG ATTGGCCATC 
CTGCTGTATC TGGCCATGGG ATGGAGCGGT GTGCTGGCGC TGGAGCCGAT TTCTGAGCGG 
CTGCCACCTG TCACCATGGT GCTGATCTTC ATCGGCGGCA TTCTTTATTC CGCAGGGGTG 
ATCTTTCACG TCTGGGAGAG ACTGCGGTTT CAAAATGCCA TCTGGCACGG TTTCGTGGTG 
GCGGCGGCTG CCGTGCATTA TTCCGCCGTG GTCACCGCCA TCGGGTCTTG A 

 

Protein sequence

MEEFRFGRHY DFHELLADGI VHGVGVVFAL VGVTALIFYA TVFTSFGEIA ASWIYGLGLV 
LALGCSFTYN MWPRSTFKTY LRRLDHSAIF VLIAATYTPF LERGADEPAI LCLLIGIWLT 
AITGIFLKCR YPGRYDRLAI LLYLAMGWSG VLALEPISER LPPVTMVLIF IGGILYSAGV 
IFHVWERLRF QNAIWHGFVV AAAAVHYSAV VTAIGS