| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1211 |
|---|
| Symbol | xylH |
|---|
| ID | 7387603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1026133 |
|---|
| End bp | 1027446 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650664 |
|---|
| Product | ABC transporter membrane spanning protein (xylose) |
|---|
| Protein accession | YP_002548870 |
|---|
| Protein GI | 222147913 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4214] ABC-type xylose transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.462112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGATC ACACACTTGG CGCAGCATCC AGCAGTGCGC GTCCGTCAAC GGTCAGTCCC
TGGCGGCGGT TTCTGAACGC TACCGAAATC GACACCCGGT TGATGGGCAT GGTGGTCGCG
CTGCTGCTCA TCTGGTTCGG CTTCCATATT CTGTCGGATG GTCTGTTTCT GACCCCGCGC
AATCTGTGGA ACCTATCGGT CCAGGCGGCG TCGGTCTCGG TCATGGCCAC GGGCATGGTG
CTGGTTATCG TCACCCGCAA TATCGATCTG TCCGTCGGAT CGATCCTGGG CTTTGTCGGC
ATGATGATGG CCGTCACCCA AACCAAGTTT CTGCCGCAGC TGCTCGGCTA CGACCATCCG
CTGATGTGGG TGCTGGCGCT CTCGCTCGGC ATTGTCATCG GCGCTGCCAT CGGGGCGTTT
CAGGGCGTGA TCATCGCCTT TCTCAACGTG CCGTCCTTCA TCGTCACGCT GGGCGGTCTG
CTGGTCTGGC GCGGCTGCGC CTGGATGGTC ACGAGCGGTG CGACCGTCGC GCCGATGGAT
ACCCGTTTTC GCCTGATGGG CGGCGGTGCG GATGGCTCGA TTGGGGCCAC CGCCAGCTGG
GTGGTCGGGA TCATCGCCTG CGTGTTCATC GTGTTGTCGA TCCTGCATTC CCGCCGTCAG
CGCAAGCGGT TCGGCTTTCC GCTAAAGCCG ATCTGGGCTG AATATTTCAT GGGACTGATC
GGCTGCGGTG CGGTGCTTGG CTCCGTCAGC GTGCTCAACA GCTATTACAT GCCCGTCAAT
CTGGCCCGCA AATATGCCGA GGCCAACAAT ATCGCCTGGC CGGACAGCGG GCTGGACATT
TCGCTGGGTA TTGCCATTCC GGTGTTGATC GCGCTTGGCA TTGCCATGGT CATGAACTTC
ATCACCAACC GCACAAGGTT TGGCCGCTAT GTGTTTGCCA TTGGCGGCAA TCCGGAAGCT
GCCGTGCTGG CGGGCATCAA GACCCGCTGG GTGACAGTGC GGATCTTTGC GCTGATGGGC
GCGCTTTGCG CCATTGCCGC GGCGATTTCC ACCGCCCGTC TCAATGCCGC CACCAATGCG
CAGGGCACGC TGGACGAGCT TTACACCATT GCCGCAGCCG TGATTGGCGG CACATCGCTG
GCCGGTGGGG CCGGCACCAT TGCCGGTGCG GTACTGGGTG CCATCGTCAT GCAATCGCTG
AATTCTGGCA TGGTGCTGCT GGGCATGGAT ACGCCGCTGC AAAGCATTGT CATCGGCATG
GTGCTGGTCG TCGCGGTCTG GCTGGATACG GTTTACCGCG CCCGCACCCG ATAA
|
|---|
| Protein sequence | MVDHTLGAAS SSARPSTVSP WRRFLNATEI DTRLMGMVVA LLLIWFGFHI LSDGLFLTPR
NLWNLSVQAA SVSVMATGMV LVIVTRNIDL SVGSILGFVG MMMAVTQTKF LPQLLGYDHP
LMWVLALSLG IVIGAAIGAF QGVIIAFLNV PSFIVTLGGL LVWRGCAWMV TSGATVAPMD
TRFRLMGGGA DGSIGATASW VVGIIACVFI VLSILHSRRQ RKRFGFPLKP IWAEYFMGLI
GCGAVLGSVS VLNSYYMPVN LARKYAEANN IAWPDSGLDI SLGIAIPVLI ALGIAMVMNF
ITNRTRFGRY VFAIGGNPEA AVLAGIKTRW VTVRIFALMG ALCAIAAAIS TARLNAATNA
QGTLDELYTI AAAVIGGTSL AGGAGTIAGA VLGAIVMQSL NSGMVLLGMD TPLQSIVIGM
VLVVAVWLDT VYRARTR
|
|---|
| |