| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1193 |
|---|
| Symbol | |
|---|
| ID | 7386244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1007844 |
|---|
| End bp | 1009019 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650650 |
|---|
| Product | sensory transduction regulatory protein |
|---|
| Protein accession | YP_002548856 |
|---|
| Protein GI | 222147899 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGC CCCGCGTCTG GCGTGCTACA GTGACAGCGT TGGACTTGAC CTCATCGATT
TTCCGACGCT GCCTGCCGAG TCATGGCTTG CTCCGCAAGT CTTCGGCCCT AGAGGGCCTT
TTCATGCCAA AGATACCGAC ACTCCATCTT GAAGCGGCGA GCACGCTTGC CGTGGTGGTG
TCTTCCAACG AACCGTTGTT GTTTCTGTCG GACGACCTTA GAATTATTGC GGCAAGCACA
TCGTTCTGTC GGGCGTTCGA AATCGACCCC ACGTCCACCT CCGGTAAACG CCTCGGCGAC
CTTGGTAGCG GCGAATGGGC GATGCCCAGG CTTCAGTCGC TGCTGATGGC GACTGCTACC
GGCAGCGTAA ACGTGGATGC CTACGAGATC GATCTGAAGC GACCAAACCA TAAAACGCGG
CGTTTGGTCG TCAATGCACG AACGCTCGAT GACGGCGACC TCAACCATAT TCGTCTGCTT
CTCGCCATAA CCGACGTGAC CGACATGCGC GCCGAAGCGC GCCTGAAAGA CGATCTGGTG
CGCGACAAAG CCATCCTGTT GCAGGAGGTC CAGCATAGGG TCGCCAACAG TTTGCAGATC
ATCGCCAGCG TCCTGATGCA GAGCGCACGT CGCGTTCAGT CGGAGGAGGC ACGCGGACAT
CTGCACGATG CCCGTCAACG CATCATGTCT ATCGCCGCGC TGCAACGGCA GCTTTCCGCA
TCCCCCGGCG GCAGTGTTGA ACTCAGTGCC TACTTCACGC AACTGTGCCA AAGCCTCGGC
GCATCAATGA TCGCCGACCC CGAGAGGCTA TCGATCCAGG TGACGGTTGA CGATAGTACC
GTGGATGCAG ACGCATCCGT AAGTCTGGGG CTCGTCGTAA CCGAACTGGT GATCAATGCC
CTCAAACATG CCTTTCCAGA CGGGCGAGCC GGGATGATCG CCATCGACTA TCGATCGGCG
GGCAAGGATT GGGCGCTTAC CATTACCGAC AACGGTATAG GAATGCCGGT GGGCAACGAT
GCACCCAAGG CGGGATTGGG GACGGGTATT GTGGAAGCAC TCGTGAAGAA TATGAACGGT
GAGATTACGT TGAGCAGCGC GGAGCCAGGT ACGGTGGTTA CAATCAGTCA TCGGGAAGCG
TCGGACCGTC AGCCTGACTT TTCGCCAGCG GCATAA
|
|---|
| Protein sequence | MQQPRVWRAT VTALDLTSSI FRRCLPSHGL LRKSSALEGL FMPKIPTLHL EAASTLAVVV
SSNEPLLFLS DDLRIIAAST SFCRAFEIDP TSTSGKRLGD LGSGEWAMPR LQSLLMATAT
GSVNVDAYEI DLKRPNHKTR RLVVNARTLD DGDLNHIRLL LAITDVTDMR AEARLKDDLV
RDKAILLQEV QHRVANSLQI IASVLMQSAR RVQSEEARGH LHDARQRIMS IAALQRQLSA
SPGGSVELSA YFTQLCQSLG ASMIADPERL SIQVTVDDST VDADASVSLG LVVTELVINA
LKHAFPDGRA GMIAIDYRSA GKDWALTITD NGIGMPVGND APKAGLGTGI VEALVKNMNG
EITLSSAEPG TVVTISHREA SDRQPDFSPA A
|
|---|
| |