Gene Avi_1162 details

Gene Information

• Locus tag: Avi_1162
• ID: 7386222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 984228
• End bp: 986129
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643650628
• Product: hypothetical protein
• Protein accession: YP_002548834
• Protein GI: 222147877
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTGG CGCTCAATGC CTACCGGCAG GGCGCGTTCG AAAAGGCTCT CGGTCATGCG 
CAGGCGGCAG TCAAGCAATT GGCGCGGGCC GGAAAAGCCG GGCAGGCCGA AATGCTGGCC 
GCCAATATCT ATCTGAAGCT CGGCCAGAAG ATTGAGGCCG CGCAAGCCTT TGCCCGGTCG 
GCAGCGGCTT TGCCGGAAAA GCGCGCCGAA TTCCTGAAAT TCGCCGCCAA GCTTTATCTG 
GCCGAGCGGC GCGTCGATCT TCTGGAGGGC ATTGCTGTTG CCGCAGCGCG CGCCAATGCT 
GATGATGCGG GTTTTGTCGG CGAGATCGCC AATATGCTGC TGGGGGCGGG CATGCATCCG 
CCACTGGATG AATTGGTGCC GCTTCTCGAT ATGACCAATA ACTGGCATTT GCAGATCGTC 
ATCAACCATT ACCAATTGAC ACGCAAACCG GACAAGCTGA AGCCGATCAT CGAAAAGCGC 
TATGCGGAAA GCCCCGGGGA CAGTTTTGTC GCGGTGAATT ATTTCATGTT CTGCCGCTCC 
AGCCTGTTCT TTCCGGTGGC AAGACAATGG CTGGACATGA TGAAAACGCC TGAAGATCCG 
TTGACGGCGG AGATCCTTTA TCGTGACCAG CCTCTATCGC GCTGCTACTG GAGCGACGAT 
CAGGCGGTGA TCAACGGTCC TTGCGGCGGC ACCGACATGC TTCAGCGCAA TGTGGGCACT 
GTCATGCCAC GGCGCGCGGT TCGCCCTTTG GGCGAAAAAC TCAAGATCGG TTATCTCTCT 
TCGGATCTGA CCATCCACGC CACCATGTAT CTTCTTTACG ATGTCTTTCT GGCCCATGAC 
CGCAGCCGTT TCGACGTTAC CTTTTTTTGC CATACGCCGC CTGGTCAGGC CGCCATACAA 
AAGACCTGGG ATCCGGTGCT ACAATCGGAA ATTATCGCTG TCGGCCAGAT GGATAATGAC 
GGGATCGCCC AGGAAATCAG CCGGCGCGGC ATCGATATTC TCATCGATCT GAAGGGACAC 
ACGGCGGGCA ACCGGCTTGC CGCTGTCGCT CTTTCGGATG CGCCGGTCAA GGCCAGCTGG 
ATCGGTTATC CCGGCTCGGT GCGTGGCGCG GGGCTCGATT ATCACATGAC CGACCCCATC 
GTCACACCCG ACGATGCCAA GCTGTGGTTT GAGGAAAAGC TCTGCCGCCT GCCGGAAACC 
TATCAGGGCA ATTGCAGCCT GACCAAGCCG CGCCCCAAAC CGTTGAAGCG GGCCGATCAC 
GGGCTGCCGG AAGAGGTCTT TGTGTTTGCC TCTTTCAATT CTCCCGCCAA GATCAGTCCG 
CAAAGCATCA CCCTGTGGGC CTCGATCATG AACGCCGTGC CGGACAGCCT ATTGTGGATA 
TTGTGCAGTG GTGCGCAATT GCAGGCGAAT TTCGCTGAGG AATTCGCTCG CCTCGGCATT 
GGCCGCGACC GTATCGTCTT TGCCCAAGGG GTCGATTATC CTGATCATCT CAGCCGGGTG 
GGTCTTGCCG ATCTGGCGCT CGACACGTTC CCCTATAACG GCCATACCAC GACCTCGGAT 
CTGCTCTGGG GCGGCCTGCC GGTCCTGACG AAAAAGGGTC GTAGCTTTGC TGCGAGGGTG 
TCAGAAAGCC TGCTGACGGC TATCGGCCTG CCCGAACTGG TGGCGCGGGA CGGTGAAGAG 
TTTGTCGAAA GGGCGGTAGA GTTCGCCGCT CACCCGGAAA AGATCGTCGC CCTGAAACAA 
AAGCTCGAAG CCAACCGCCT CAGGGAGCCT TTGTTCGACA CTGAGCGCTT CACCCGGCAT 
CTGGAACGCG CCTATGAGAT GATGGCGGCG CGGGCCAGGG CAGGGCTTGC GCCCGACCAT 
ATCGACGTGC CAGCCCTGCC GATCCGGTCA ATGTCTTTCT AG 

 

Protein sequence

MDLALNAYRQ GAFEKALGHA QAAVKQLARA GKAGQAEMLA ANIYLKLGQK IEAAQAFARS 
AAALPEKRAE FLKFAAKLYL AERRVDLLEG IAVAAARANA DDAGFVGEIA NMLLGAGMHP 
PLDELVPLLD MTNNWHLQIV INHYQLTRKP DKLKPIIEKR YAESPGDSFV AVNYFMFCRS 
SLFFPVARQW LDMMKTPEDP LTAEILYRDQ PLSRCYWSDD QAVINGPCGG TDMLQRNVGT 
VMPRRAVRPL GEKLKIGYLS SDLTIHATMY LLYDVFLAHD RSRFDVTFFC HTPPGQAAIQ 
KTWDPVLQSE IIAVGQMDND GIAQEISRRG IDILIDLKGH TAGNRLAAVA LSDAPVKASW 
IGYPGSVRGA GLDYHMTDPI VTPDDAKLWF EEKLCRLPET YQGNCSLTKP RPKPLKRADH 
GLPEEVFVFA SFNSPAKISP QSITLWASIM NAVPDSLLWI LCSGAQLQAN FAEEFARLGI 
GRDRIVFAQG VDYPDHLSRV GLADLALDTF PYNGHTTTSD LLWGGLPVLT KKGRSFAARV 
SESLLTAIGL PELVARDGEE FVERAVEFAA HPEKIVALKQ KLEANRLREP LFDTERFTRH 
LERAYEMMAA RARAGLAPDH IDVPALPIRS MSF