Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1151 |
Symbol | |
ID | 7386214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 971713 |
End bp | 972261 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643650620 |
Product | transcriptional regulator TetR family |
Protein accession | YP_002548826 |
Protein GI | 222147869 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03384] transcriptional repressor BetI |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.741088 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAGCCA TCGGCACGCA TGGCTCGCTG GCTGTCACCA TGTCTGAAAT TGCCCGTACC GCCGGGGTTT CTCCCGCTTT GGCCCATCAT TATTTCGGCT CCAAACAGCA ATTGCTGATC GAAACGATCC GCTCGCTGTT GAGACAATTG CAAGCCGATG CCGCCAGCGC GCTGACCGCG GCAACCACCC CGCGCCAACG GATTAGCGCC GTGATCCGTA TCAGCTTCCA GGCCGACCAG TTTGCGCCCG ATACCGTGGC GGCCTGGCTT GCCTTCTATT CCGAAGCGCA ACGCTCGGAA GCGACCCGCC GCCTGCTGGT GATCTATGCC CGGCGGTTGC GCTCCAATCT GGTCAACGCC CTATTGCCTC TGGCCAGCCG GTCCGACGCC GAGCGTATTG CCGAAGGCAC GGCAGCAATG ATCGACGGGC TTTACATTCG CCAAAGCCTG CGGGCAGCGC CGCTGTCCAT TGATGCCTCT GTCACACTGG TGGAGGACTA TGTCAGCGGC CAGTTACATG CCATCAACCT TGGAGAGCCC AGACCGTGA
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Protein sequence | MKAIGTHGSL AVTMSEIART AGVSPALAHH YFGSKQQLLI ETIRSLLRQL QADAASALTA ATTPRQRISA VIRISFQADQ FAPDTVAAWL AFYSEAQRSE ATRRLLVIYA RRLRSNLVNA LLPLASRSDA ERIAEGTAAM IDGLYIRQSL RAAPLSIDAS VTLVEDYVSG QLHAINLGEP RP
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