Gene Avi_1130 details

Gene Information

• Locus tag: Avi_1130
• Symbol: pfpI
• ID: 7386200
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 956802
• End bp: 957362
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643650605
• Product: proteinase
• Protein accession: YP_002548812
• Protein GI: 222147855
• COG category: [R] General function prediction only
• COG ID: [COG0693] Putative intracellular protease/amidase
• TIGRFAM ID: [TIGR01382] intracellular protease, PfpI family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAGA TTAATGAAGC AAAGATCCTT ATTCTTGCCA CTGATGGCTA TGAGCGTTCG 
GAATTGCGGG TTCCGCTGGA TCAGTTGAAG GCCAAGGGCG CGTCCGTGAC CATCGCCTCC 
TTGAAAAAGC AGCCGATCAA AAGCTGGGAC GACAAGAACT GGGGTGACAC GGTCGATGTC 
GACCTCACTG TCGAAGAGGC TTCTGCCAGC AATTACGATG CGCTGGTTAT TCCCGGTGGC 
CAGATCAATC CGGATATCCT GCGGGCCGAT GCCAAGGCCG TCCAACTGGT GCGCGATTTC 
GTCGCCTCCG GCAAAGTCGT CGCTGCTGTC TGCCATGGGC CTTGGCTGCT GGTTGAAGCT 
GATGCATTGC GCGGCCGTCA GGCAACGTCC TATGCATCGA TCCGCACCGA TGTGAAAAAT 
GCCGGTGCCC GCTGGGTTGA CCAGACCGTG GTTGCCGATC AGGGCATTAT CACCTCGCGA 
AATCCAGGCG ATCTCGATGC GTTCGTCGCG AAAATCGTCG AGGAAGTCGA AGAAGGCCGT 
CATGAGCGGC GCGCCGCCTG A 

 

Protein sequence

MTKINEAKIL ILATDGYERS ELRVPLDQLK AKGASVTIAS LKKQPIKSWD DKNWGDTVDV 
DLTVEEASAS NYDALVIPGG QINPDILRAD AKAVQLVRDF VASGKVVAAV CHGPWLLVEA 
DALRGRQATS YASIRTDVKN AGARWVDQTV VADQGIITSR NPGDLDAFVA KIVEEVEEGR 
HERRAA