| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1114 |
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| Symbol | prsD |
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| ID | 7386189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 941615 |
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| End bp | 943411 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643650593 |
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| Product | rhiziobicin secretion |
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| Protein accession | YP_002548801 |
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| Protein GI | 222147844 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGGA GTAAGACCAC GCGCGGCGGC GTCGAGGAGT TACAGGCAGC CCTGGCGCGC
AGCAAGGCGG GCTTCCTGTC CATTGCCCTG TTCAGTTTCT TCGTCAACCT TCTGGTCCTG
ACCGGACCCT TGTTCATGCT TCAGGTCTAT GACCGGGTGC TGGCGGCGCG CTCTGAGGCG
ACGCTTCTGG TCCTGTTTCT GCTGGTCATT CTGCTCTATG CGATCATGGG CATTCTCGAC
CACGTCCGGT CACGCATCGC CGCCCGGATC GGGGCACGGC TCCAGAGCGA ATTCGACATC
AGGGTGTTTC GTGCCCTGCT CGATCGATCC GCACTGGCAT CGAAGGGCGT TGCCGGTCCA
CGCGGCATGC GCGATCTGGA CGCCCTGCAA AAAATGCTGG CGTCCTCGGC GATTTTTGCG
GTTTTTGACA TTCCATGGAC GCCGGTTTTC CTGTTCGTGA TCTTCGTTTT CCATCCCTGG
ATGGGCTATC TGGCGCTGGC GGGTGGGCTG GTGCTGATCG CGCTGACACT GCTGAACCAG
CGCGGCACCA AGCGCATCCA GGCAAAAGCT GCGGATGCCA GCCGGATCAG CGACGAGATG
ACCATGGCGC TGGCTCGTGA CGCCGAAACG GTCAAGGCCT TGGGCATGCG CAAGAGTGCG
GCGACCCGCT GGCAGGCGAC GCGCCACACG GCGCTCGCCG CCAGCATTGC CTATTCGGAT
GCCAATGGCT TTTACACAGC CGTGTCCAAA ACCTTCCGGA TCTTCCTGCA ATCGGCCATT
CTGGCGCTGG GTGCCTGGCT GGTGCTGCGC GGCGAAATCA AGGCTGGCGC GATGATTGCC
GGATCAATCC TGATCGGCCG GGCGCTGGCA CCGATTGAGA CGGCCATTTC CCAATGGGGA
CTAATGCAGC GGGCGCAGGA AGGCTGGCGC AATCTCTCAA CCCTGCTGGA GCAGATTCCC
GAGGAAGACA GCCGCACCAC CCTGCCGAGG CCCCGTGCCA TTTTGCAGGT TCAGCAGGTT
ACCGCCGTAC CGCCCGGCGA AAGCGTGGCG ACGCTGCGGA TGATGAGTTT CGAGCTTGGC
CCTGGCCATG CGCTGGGCGT GATCGGCCCC AGTGGTTCCG GCAAATCGAC CCTTGCCCGG
CTGCTGACCG GTGTCTGGCA GCCGATGGCG GGCAAGATCC GGCTGGACGG CGCCGCTCTG
GACCAATACG GCCCAGACGG GCTGGCCGAC CATGTCGGCT ATCTGCCGCA GGACGTGGTG
CTGTTTGAAG GGACGATTGC CGAAAACATC GCCCGCCTCA CCGCCGATCC CGACCCGGAC
AAGGTGATTG CCGCCGCCCG CAAGGCTGCG GCCCATGAGA TGATCCTGAA ACTGCCACAG
GGTTACGACA CCCCCCTGCC CGCCACCGGC CAGCGGCTTT CCGGTGGGCA GAAGCAGCGC
ATCGGCCTTG CCCGCGCGCT CTACGGCGAT CCGGTCCTGC TCATTCTGGA CGAGCCGAAT
TCCAATCTGG ATGCCGAAGG CTCCGTGGCG CTGAACATGG CCATCCGCGC CCTCAAGGCC
AGTGGCGGCG CTGCCGTGAT CATGGCGCAT CGCCCGGCGG CGATTGAGGA ATGCGACCTG
GTGCTGATCA TGGACCATGG CGCCCGCACC GCTTTTGGCC CGCGCGACGA GGTGCTGCGC
GCCCATCTGC GCAATGCCCA GCAAGTGGTG GGTACGAAGA CAAATACGTC ATGGGGGAAT
GCCAAACAGG AAACCACCAT GACCGGTTTC GTACCCGGCG CCCCGCGCAA GCCATAG
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| Protein sequence | MSRSKTTRGG VEELQAALAR SKAGFLSIAL FSFFVNLLVL TGPLFMLQVY DRVLAARSEA
TLLVLFLLVI LLYAIMGILD HVRSRIAARI GARLQSEFDI RVFRALLDRS ALASKGVAGP
RGMRDLDALQ KMLASSAIFA VFDIPWTPVF LFVIFVFHPW MGYLALAGGL VLIALTLLNQ
RGTKRIQAKA ADASRISDEM TMALARDAET VKALGMRKSA ATRWQATRHT ALAASIAYSD
ANGFYTAVSK TFRIFLQSAI LALGAWLVLR GEIKAGAMIA GSILIGRALA PIETAISQWG
LMQRAQEGWR NLSTLLEQIP EEDSRTTLPR PRAILQVQQV TAVPPGESVA TLRMMSFELG
PGHALGVIGP SGSGKSTLAR LLTGVWQPMA GKIRLDGAAL DQYGPDGLAD HVGYLPQDVV
LFEGTIAENI ARLTADPDPD KVIAAARKAA AHEMILKLPQ GYDTPLPATG QRLSGGQKQR
IGLARALYGD PVLLILDEPN SNLDAEGSVA LNMAIRALKA SGGAAVIMAH RPAAIEECDL
VLIMDHGART AFGPRDEVLR AHLRNAQQVV GTKTNTSWGN AKQETTMTGF VPGAPRKP
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