| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1113 |
|---|
| Symbol | rspE |
|---|
| ID | 7386188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 940216 |
|---|
| End bp | 941604 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650592 |
|---|
| Product | ABC transporter membrane spanning protein (bacteriocin) |
|---|
| Protein accession | YP_002548800 |
|---|
| Protein GI | 222147843 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT TTTCCCAGAC ATCGGCGTCA GCCTCCTCTT CCCCGGCAAG CCTGCCCGCA
TCCCCTGTGC CAAACCGGGT GTCGTCCACC CCTGAAAGCC ACGTCTGGCA GGCCCAAGGT
CACACGGCAC TCGGCTATGG CGCGCTGGCG GTCTTAGTGT TGGGGCTGGG TGCCTGGAGC
GCACTGACCA CCATCCAGGG CGCCGTGGTC GGCAGCGGCA CGGTGGAGGT GGAAACCAAC
CGTCAGGTGG TCCAGCACCA GGCCGGTGGC ATCGTGCAGG ACTTGCTGGT CAAGGAGGGC
GATGTCGTCC AGCCCGGCCA GGTTCTGCTC AGAATGGATG AAAAGCTCGA CCAATCCGAG
CTGACGATTA TTGAAAACCA GTTGTTTTCG CTGCTCGGCA ATGCCGGGCG GCTGACCGCC
GAACAGGATG GCAAGAGCGA GATCAGCTTC GACCCCGAAC TTGTCGAACG GGCAAAGACC
GACAGCCATG TGCGCGAGAT TATCGAGGGC CAGCGCAACC TGTTGCAGGC GCGACAGGAA
AACCGTGACA AACAGGTCGG GCAATTGCAG GAGCGCAAGC ACCAGACCGC CCAGCAAATC
GAGGGCCTAA ACGCCAAGCT CAATGCGCTG CGCCAGCAAA GGCAGTTGAT CAGCGAGGAA
CTGGCCGTGC AGCAGAAATT GCTGCGCGAC GGCCTGACCC AGACCAGTAA GGTCATGACG
CTGCAACGGT CCGAGGTCGA GGCAGACGGC GAGATCGCCT CGTCCATGGC CAGCATTGCC
GAAAGTCGCG CCAAAATCGC CGAGATCGAA ATCGCTATTC TGAATGTTAG TGGCGAACTG
CGTGAACAAT CGATCACCGA TCTGCGCAAT GCCGAAGCGC AGATTGCCGA ATTGCGTCAG
AAACGGGTCT CCTCCCTGGA AACCCTTGGC CGCACCGAAG TGACCGCGCC AACCGGCGGC
GTGGTGTTCG GCCTGACCGT GCATGCGTTG CGCACCGTGG TCAAAGCGGC AGAACCGATC
CTCTATATCA TACCGCAGAA TGTCGGGCTG GTGATCACCA CCAATTTGCC GCCCAATGAA
ATCGATCAGG TGCATGTCGG CCAGAAGGCC GATCTGGTGT TTGCCGCTTT CGACCGCCGC
CAGACGCCGG ATATCCACGG CACGGTGATT GAGGTCTCCG CCGACGTGTT CAATGATGAA
AAGACTGGAA ACAGCTTCTA TAAGGCGAAG ATAAAGCCCG ATGAACAGGA AATTGCCCGG
CTGGGCGATG TCCAGGTCCT GCCGGGGATG CCGGTTGAAA CCTTTATCCA GACCACGGAA
CGCTCACCCT TCACCTATCT CACAAAACCG CTGGCCAGTT ATTTCAACAA GGCATTCCGG
GAGCGGTGA
|
|---|
| Protein sequence | MSLFSQTSAS ASSSPASLPA SPVPNRVSST PESHVWQAQG HTALGYGALA VLVLGLGAWS
ALTTIQGAVV GSGTVEVETN RQVVQHQAGG IVQDLLVKEG DVVQPGQVLL RMDEKLDQSE
LTIIENQLFS LLGNAGRLTA EQDGKSEISF DPELVERAKT DSHVREIIEG QRNLLQARQE
NRDKQVGQLQ ERKHQTAQQI EGLNAKLNAL RQQRQLISEE LAVQQKLLRD GLTQTSKVMT
LQRSEVEADG EIASSMASIA ESRAKIAEIE IAILNVSGEL REQSITDLRN AEAQIAELRQ
KRVSSLETLG RTEVTAPTGG VVFGLTVHAL RTVVKAAEPI LYIIPQNVGL VITTNLPPNE
IDQVHVGQKA DLVFAAFDRR QTPDIHGTVI EVSADVFNDE KTGNSFYKAK IKPDEQEIAR
LGDVQVLPGM PVETFIQTTE RSPFTYLTKP LASYFNKAFR ER
|
|---|
| |