Gene Avi_1110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1110 
SymbolrhtB 
ID7386186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp938781 
End bp939410 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content56% 
IMG OID643650590 
ProductRhtB family transporter 
Protein accessionYP_002548798 
Protein GI222147841 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAAA TACTTCTGAT TGCTTCGATA ACCTGGCTGG CCGTTCTCAG CCCCGGCGCG 
GATTTTGCCA TGGTGTCGCG CAATAGTTTT CTCTATGGCC GCAAATCCGG GCTGGCGGCC 
TCGATGGGCA TTGCCATCGC CTGCTGGTTT CATGTGATCT ATGCCATGTT CGGCATTGCG 
ATCATCCAGC ATATTTTCCC CAATATTCTG GATATCATCA AATTCGTCGG CGCGGCCTAT 
CTGGTCTATG CGGGCCTGGC CACGGCCTTC AGCAAGATAC GCGATGTCGA AGGCAGTCTG 
GTTCCCAGCG ACAGATCCAT GGGCCGGGAA ATGATGACGG GTATTCTGAC CAATGGTCTC 
AATCCGAAGA CGTCGATTTT CGTGATCAGT CTCTACACGC AATTCATCGG CAAGGACACG 
CCGCTGTCCC ACCAATTGCT TTGGGGCCTG TTCATCTCCC TGTCGCATTT GCTGTGGTTC 
GCATCCGTTT CGACCTTTCT GTCCAACCCG GCCATTCGAA CCGTTGTGCT GCGTCGCCAG 
CGCCTGTTCA ATATCCTGAT CGGGGTCGTG CTCGCCTCGC TGGGGGCCAT TCTGTTCACC 
GCGGGCACTT TGGGGAGTGG CGCGCAATGA
 
Protein sequence
MEQILLIASI TWLAVLSPGA DFAMVSRNSF LYGRKSGLAA SMGIAIACWF HVIYAMFGIA 
IIQHIFPNIL DIIKFVGAAY LVYAGLATAF SKIRDVEGSL VPSDRSMGRE MMTGILTNGL 
NPKTSIFVIS LYTQFIGKDT PLSHQLLWGL FISLSHLLWF ASVSTFLSNP AIRTVVLRRQ 
RLFNILIGVV LASLGAILFT AGTLGSGAQ