| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1102 |
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| Symbol | ppdK |
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| ID | 7386181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 931448 |
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| End bp | 934132 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643650585 |
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| Product | pyruvate phosphate dikinase |
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| Protein accession | YP_002548793 |
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| Protein GI | 222147836 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
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| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.883185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGAAGT GGGTCTACAG CTTCGGCGGC GGCAAGGCTG AGGGCGGTGC TGGCGATGTT
GAACATTTGG GTGGTAAAGG TGCCAATCTC GCTGAAATGG CGGGCCTTGG CCTGCCCGTG
CCGCCGGGTC TGACGATTGT CACGGATGCG TGCACGCATT TCTACGCCCA TGGTCGCAGT
CTGGCCGACG ACATGAAGGC AGAGGTGCTG GCCGGTATCG ACCTGATCGA AGCCGAGACC
GGACGCACGT TCGGCAACGC CAAAAATCCC CTGCTTCTGT CGGTGCGCTC GGGTGCGCGC
ACCTCCATGC CGGGCATGAT GGATACGGTG CTCAATCTCG GCCTGAACGA TGAGACGGTG
GTCGGTCTTG CCCATCGCGC CGGAGACGCT CGCTTTGCCT GGGACAGTTA CCGCCGCTTC
ATTCAGATGT ATGGCGATGT CGTTCTGGGG CTGGATCATG AAGTGTTCGA GGAAATCCTT
GAGCATGAGA AGGGCCGGTT TGGCCATGAA CTCGACACCG AACTGAGCGC CGATGAATGG
CAGCATGTGA CTGACCTCTA CAAGCAATTG ATCGAGGATG AGCTGGGCGA ACCCTTTCCG
CAGGACCCTG AGGTTCAGCT CTGGGGGGCG GTGGCCGCGG TGTTTGCCAG CTGGATGAAC
GCCCGCGCCA TCACCTATCG GCAGTTGCAC AATATTCCCG GCCATTGGGG CACGGCGGTC
AATATCCAGG CCATGGTGTT TGGCAATCTC GGCTCCAGTT CGGCCACAGG GGTGGCATTT
ACCCGCAACC CGTCGACGGG CGAAAACCAG CTTTACGGCG AGTTTCTGGT CAATGCCCAG
GGTGAGGACG TGGTAGCGGG TATCCGCACC CCGCAATCCC TGAGTGAGCG GGCGCGGCTG
GAAAGCGGTT CCGACAAGCC GTCGATGGAA AAGCTGATGC CCAAGGCCTT TGCCGAGTTT
ACGGCGGTCT GCGCGCAGCT TGAAACCCAT TACCGCGACA TGCAGGATGT GGAATTCACC
ATTGAGCGCG GCAAGCTGTG GATGTTGCAG ACCCGCTCCG GCAAGCGCAC CACCAAGGCG
GCCATGAAGA TCGCTGTCGA TATGGTGGCG GAAGGGCTGA TCGATGAGGA CGAGGCGGTG
TCGCGCATCG AGCCGGCGTC GCTGGACCAG CTTTTGCATC CCACCATCGA TCCGCGCGTG
GCGCGGGATG TGATCGGCTC CGGCCTGCCA GCGTCTCCGG GCGCGGCTAC CGGCGAGATC
GTCTTTACCG CCGAAGACGC GGTCAGTGCC AAGGAAGAAG GCCGCAAGGT TATTCTGGTG
CGCATGGAAA CCAGCCCGGA AGACATTCAC GGCATGCATG CCGCCGAAGC CATCCTGACC
ACCCGTGGTG GCATGACCAG CCATGCGGCG GTGGTGGCGC GCGGCATGGG CATTCCCTGC
GTGGCCGGTG CCGGCAGCAT GCGGGTCGAT ATCCGCAATG GCGTGCTGCT GGGCGTCGGC
GTCAAGCTGA AGAAGGGTGA TATCATCACC ATAGATGGTT CATCCGGCCA GGTTTTGCAG
GGTGCCGTGC CGATGCTGCA ACCGGAATTG TCGGGGGATT TTGCCCAGCT GATGCAATGG
GCGGACCGCA CGCGTCGCAT GACGGTGCGC ACCAATGCCG ACACGCCGGG CGATGCGCGG
GCCGCCCGCT CTTTCGGCGC TGAGGGTATC GGACTTTGCC GCACCGAACA TATGTTTTTC
GAAGGTGAGC GCATCCATGT GATGCGCGAA ATGATTCTCG CTGAAAACGA AGCGGGTCGC
CGGGCTGCCC TCGACAAGCT GTTGCCAATG CAGCGCTCGG ACTTTACCGA GCTGTTCACC
ATCATGCATG GCCTGCCGGT GACGATCCGC CTGCTCGATC CGCCGCTGCA CGAATTCCTG
CCGAAGACGG CCAAGGAAAT TACCGAGGTG GCCGTGGCGA TGGGCATGGA GCCGCGCGCT
CTGGCGCAGC GAGTCGAGGC TTTGCACGAG TTCAACCCCA TGCTCGGCCA TCGCGGCTGC
CGGTTGGCGA TTTCCTATCC TGAAATTGCC GAGATGCAGG CGCGGGCGAT TTTCGAAGCC
GCCGTTGCCG CAGGCCTTGA GACCGGTGCA CCGGTCGTAC CTGAGATCAT GGTGCCGCTG
GTCGGGCTGC GCTCCGAGCT GGATTATGTG AAGGGCGTGA TCGACCGGAT TGCCTCTGAA
GTGATGCGGG AAGGCAAGCT GGAAATCTCC TATCTGGTCG GCACGATGAT CGAGCTGCCG
CGTGCCGCCA TCCGCGCCCA TGTGATTGCC GAGGCCGCCG AATTTTTCTC CTTCGGCACC
AACGACCTGA CCCAGACGAC GTTCGGCATG TCACGCGACG ACGCAGCCGC CTTCCTTCCG
ACCTATCAGC GCAAGGGGAT TATCGAGCGC GATCCATTCA TCTCGCTGGA TTTCGACGGG
GTCGGCGAGT TGATCCGCAT GGCCGCCGAG CGCGGTCGCC AGACCCGTCC CGATATGAAG
CTCGGTATTT GCGGCGAACA TGGCGGCGAC CCGGCCTCGA TCCATTTCTG CGAGGATGTC
GGGCTGGATT ATGTCTCCTG CTCACCCTTC CGGGTGCCGA TTGCCCGGCT GTCCGCCGCC
CAGGCAAGTA TCAAGCAAAG GCGCCTCATG GCGAAGGAAG TTTGA
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| Protein sequence | MGKWVYSFGG GKAEGGAGDV EHLGGKGANL AEMAGLGLPV PPGLTIVTDA CTHFYAHGRS
LADDMKAEVL AGIDLIEAET GRTFGNAKNP LLLSVRSGAR TSMPGMMDTV LNLGLNDETV
VGLAHRAGDA RFAWDSYRRF IQMYGDVVLG LDHEVFEEIL EHEKGRFGHE LDTELSADEW
QHVTDLYKQL IEDELGEPFP QDPEVQLWGA VAAVFASWMN ARAITYRQLH NIPGHWGTAV
NIQAMVFGNL GSSSATGVAF TRNPSTGENQ LYGEFLVNAQ GEDVVAGIRT PQSLSERARL
ESGSDKPSME KLMPKAFAEF TAVCAQLETH YRDMQDVEFT IERGKLWMLQ TRSGKRTTKA
AMKIAVDMVA EGLIDEDEAV SRIEPASLDQ LLHPTIDPRV ARDVIGSGLP ASPGAATGEI
VFTAEDAVSA KEEGRKVILV RMETSPEDIH GMHAAEAILT TRGGMTSHAA VVARGMGIPC
VAGAGSMRVD IRNGVLLGVG VKLKKGDIIT IDGSSGQVLQ GAVPMLQPEL SGDFAQLMQW
ADRTRRMTVR TNADTPGDAR AARSFGAEGI GLCRTEHMFF EGERIHVMRE MILAENEAGR
RAALDKLLPM QRSDFTELFT IMHGLPVTIR LLDPPLHEFL PKTAKEITEV AVAMGMEPRA
LAQRVEALHE FNPMLGHRGC RLAISYPEIA EMQARAIFEA AVAAGLETGA PVVPEIMVPL
VGLRSELDYV KGVIDRIASE VMREGKLEIS YLVGTMIELP RAAIRAHVIA EAAEFFSFGT
NDLTQTTFGM SRDDAAAFLP TYQRKGIIER DPFISLDFDG VGELIRMAAE RGRQTRPDMK
LGICGEHGGD PASIHFCEDV GLDYVSCSPF RVPIARLSAA QASIKQRRLM AKEV
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