| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1073 |
|---|
| Symbol | rimJ |
|---|
| ID | 7387154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 906445 |
|---|
| End bp | 907059 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643650562 |
|---|
| Product | ribosomal-protein (S5)-alanine N-acetyltransferase |
|---|
| Protein accession | YP_002548770 |
|---|
| Protein GI | 222147813 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGGT CTGTGTTCGG GTTTCTGTCG CGCCAGCCGG AACGGCCTGA ACTGCGTGAC
GGAACACGTC TGCTGCGGCT GCCGCGCAAT GGCGATTATA ATCAATGGTA CAGGCTACGG
TCCGAAAGCC GGGCTTTTCT TCAGCCCTGG GAACCGCTCT GGCGTCCGGA CGAGCTGACC
GAAAGCGCCT TTCGATCGCG TGTCATGCGC AATGCCCAGG AATATGCCTG TGGGCTGGCC
GTGCCGTTTT TTCTGTTTCG CGAAAGCGAC GCTGTGCTGA TGGGCGGGTT GACCATCGGC
CTGATCCGGC GCGGCGTCTC CCAGGCCTGT ATGATCGGAT ATTGGATGGG CGAACGTTTC
GCCGGCCAAG GCCATATGTT TGCCGCACTT CAATTGGCAA AACCATATAT CTTCAAGGAA
CTTGAGTTGC ATCGTATCGA AGCCGCCTGT ATTCCTGACA ATGACAAAAG CATCCGCCTG
CTGGAGCGGG CCGGTTTTGA ACGGGAAGGT CTGTTGCGCG GATATTTGAA CATCAACGGG
CAGTGGAGAG ATCATGCGAT CTACTCGCTT CTGGCGGAAC CTGGTGCCGT TTCCGGCAAA
AAACTCTATT CATGA
|
|---|
| Protein sequence | MTRSVFGFLS RQPERPELRD GTRLLRLPRN GDYNQWYRLR SESRAFLQPW EPLWRPDELT
ESAFRSRVMR NAQEYACGLA VPFFLFRESD AVLMGGLTIG LIRRGVSQAC MIGYWMGERF
AGQGHMFAAL QLAKPYIFKE LELHRIEAAC IPDNDKSIRL LERAGFEREG LLRGYLNING
QWRDHAIYSL LAEPGAVSGK KLYS
|
|---|
| |