| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1072 |
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| Symbol | |
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| ID | 7387153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 903491 |
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| End bp | 906448 |
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| Gene Length | 2958 bp |
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| Protein Length | 985 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650561 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548769 |
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| Protein GI | 222147812 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATAT TCAGATACTC ATCCGAGGCC AATTCCCGGC GATTTTTTGA GCAGAAACAG
ACCCTATCCA GCCCGGGCCT GTTGCGGCTT GCCGCTGGCC TTCTGGTGCT GGTCCTGACA
CTGACCGGGT TTGGCGCGGA CATCAGCCAT GCCGCCGAAC CGGTGAAGAT CTCCCGGGAC
GACACGGCGC TCGACCTGAC CGCCACCACG GAAATCCATC TCAATCAGGG TGAGGCATTC
CAGGTCTCCA CTGCCGCCGG TTCCGATGGC ATCCGCCGCC GCATCGAAGT GCGTGCCTCA
TCAGCGCAGC ACCAGGGCGA CTGGGCGGTG TTCGCGCTCG CCAATGTGTC CGACGAGCAG
TTGGAGCGGG TCATCGTCGC GCCGCATTAT CGTCTCGTCA ATTCCAAGGT GTTCTGGCCG
GATCTCGGCT CGCAGCGGAT CATTTCCATC ACCCCCAGCG AGGGATTTTC GCTGGATCGG
GTGCCGAGCG ACGATGCCGA CGTGTTTCGC ATCACCCTCA ATCCGGGCGC GGTGGTGACG
TTCGTGGCCG AACTGGCAAC GCCGAACCTG CCGCAGATCT ACCTGTGGGA GCCGGATGCC
TATAAGGATA CGATCAACTC GTTCACGCTT TATCGCGGCA TCGTGCTGGG CATTTCCGGC
CTGCTGGCGG TGTTTCTGAC CATTCTGTTC GTGGTGCGCG GCACATCCAT GCTGCCCGCA
GCGGCCTCAC TGGCCTGGGC AGTGCTCGCC TATATCTGCG TCGATTTCGG TTTCCTTGGC
AAGCTGATCA GCATCACCAC CCATAGCGAG CAGATCTGGC GAGCCGGGGC CGAGGTGGGT
CTGGCCTCAG GCTTCGTGAT TTTTCTCTTT ACCTATCTCA ACCTCAATCG CTGGCATGTG
AACCTCGGCT ACGCGACCTT TGCCTGGATC TTGGGCCTGG TGCTGCTGTT TGGCGTGGCA
ATCTACGATC CGTCGATTGC CGCAGGCATT GCCCGACTGT CCTTTGCGCT GACGGCCACG
GCGGGGATCG CGCTGATCGT CTATCTCGGC TTGAACCGTT ATGACCGCGC CATCCTGCTG
GTGCCGACCT GGACGCTGAT CATCGTCTGG CTGATTGCCG GCTGGATGAC GGTGACGGGA
CGGCTGTCGA ACGATATCAT CCAGCCTGCT CATGGCGGCG CGCTGGTGCT GATCGTGCTG
CTGATCGGCT TCACCGTCAT GCAGCACGCC TTTGCTGGCG GTGGCTATAA CCAGGGCCTG
TTTTCCGATC TGGAACGCCA ATCCCTGGCA CTGACTGGGG CTGGCGACAT TGTTTGGGAC
TGGGATGTGG CCCGCGACCG AGTGGTGACC ATTCCCGATA TTTCCACCCG GCTCGGCCTC
AGCCACGGCG CGCTGCACGG GGCTGCCCGC AACTGGATTC CCAGCCTGCA CCCCGATGAC
CGCGACCGGT TTCGCGCCAC ACTGGATGTG CTGCTGGAAC ACAAGCGCGG GCGGCTGAAC
CACGAATTCC GCATCCGCGC CGATGACGGG CATTTCCACT GGCTGCATAT CCGTGCCCGG
CCCGTATTGG GAGCCAACGG CGAAATCATC CGCTGCATCG GTACGATTGC CGATGTCACC
GAACAGAAAA ACACCGTCGA CCGGCTGTTG CAGGATGCGA TCAACGACAA TCTCACCGGC
TTGCCGAACC GGGAAGTGTT TCTGGACCGT TTGCAGACGC TTTTGACCGT GACCGCCACC
GCCGATACGG TGCGCCCGAC GGTCATGATC GTTGACATCG ACAATTTCGG TCGGGTCAAC
GACATGCTCG GTATTTCCGC CGGAGACAAT ATCCTGATCG CGCTGACCCG GCGGCTGCGG
CGGCTATTGA AGCCGCAGGA TACGCTGGCC CGGCTTTCGG GAGACCAGTT CGGCCTGATC
CTGATTTCCG AACGCGATCC GGCCAAGGTC GCCGATTTCG CCGATGCGAT GAACAAGGCG
ATCATGGTGC CGATCAATTT CGCCAATCGG GAGATCAATC TGACCGCCTC CATCGGCCTT
GTCTCCTGGG TGGACCAGCA GGAAAGCGCT GCCGGGCTGT TGTCGGATGC CGAGCTTGCC
ATGTACCGCG CCAAGCGCGG TGGCGGCAAC AAGGTGGAAC CCTTCCGCCC GGCCTTCCGG
GGCACCGTCT CGGAAAAGCT GCAGTTGGAA ACCGAACTTG CCCGCGCGGT CGAGCGCGGC
GAATTGACCA TGGTCTATCA GCCGATCGTG CGGCTGGATG ACGAGGAGCT GGCCGGTTTC
GAAGCGCTGA TGCGCTGGGA ACACCCCAAG CGCGGCACGA TCTCCCCCTC CGAATTCATA
CCCCTGGCGG AAAGCTGCGA CCTGATCATG CCGCTCGGCA TGTTCGCGCT GGAGCGGGCG
GCAACGGATC TGGTGGAATG GGAAAAACAG ACAGGCGAAA TGCCGATTTT CGTCTCCGTC
AACCTGTCCA GCGCCCAGTT GATCAACAAC ACGCTCTATA CCGACATCCG CAGTCTGCTC
AGCCGAGTCA ATTGCAATCC GGCCCGGCTG AAACTGGAGC TGACCGAATC TGTCGTCGTC
GAGAATCCCG AACAGGCAAG GCTGGTGCTG GAAAAGCTGA AGGATATCGG GCTCAGTTTG
GCTCTGGACG ATTTCGGCAC CGGCTATTCC TCGCTGTCCT ATCTGACCCG CTTTCCCTTC
GATACGCTGA AACTCGACAG GGAACTGGTG ACCGACACAA GCGAGCGGCG CAATATCCTG
CTGCGCTCGG TGATCGGAAT GGCCAAGGAC ATGGGCATGG ATGTCGTGGC GGAAGGCATT
GCCAGCGAGG ACGATGGGGA CGAACTGGCG CAGATGGGCT GCCACTATGG CCAGAGCTTC
CTCTACGGCG CTCCGGTCGG CCCGGAAGCG GTCATGCGTC TTTTGAAAGA CCAGCAACAG
CGAGCAAAGC GGGCTTGA
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| Protein sequence | MNIFRYSSEA NSRRFFEQKQ TLSSPGLLRL AAGLLVLVLT LTGFGADISH AAEPVKISRD
DTALDLTATT EIHLNQGEAF QVSTAAGSDG IRRRIEVRAS SAQHQGDWAV FALANVSDEQ
LERVIVAPHY RLVNSKVFWP DLGSQRIISI TPSEGFSLDR VPSDDADVFR ITLNPGAVVT
FVAELATPNL PQIYLWEPDA YKDTINSFTL YRGIVLGISG LLAVFLTILF VVRGTSMLPA
AASLAWAVLA YICVDFGFLG KLISITTHSE QIWRAGAEVG LASGFVIFLF TYLNLNRWHV
NLGYATFAWI LGLVLLFGVA IYDPSIAAGI ARLSFALTAT AGIALIVYLG LNRYDRAILL
VPTWTLIIVW LIAGWMTVTG RLSNDIIQPA HGGALVLIVL LIGFTVMQHA FAGGGYNQGL
FSDLERQSLA LTGAGDIVWD WDVARDRVVT IPDISTRLGL SHGALHGAAR NWIPSLHPDD
RDRFRATLDV LLEHKRGRLN HEFRIRADDG HFHWLHIRAR PVLGANGEII RCIGTIADVT
EQKNTVDRLL QDAINDNLTG LPNREVFLDR LQTLLTVTAT ADTVRPTVMI VDIDNFGRVN
DMLGISAGDN ILIALTRRLR RLLKPQDTLA RLSGDQFGLI LISERDPAKV ADFADAMNKA
IMVPINFANR EINLTASIGL VSWVDQQESA AGLLSDAELA MYRAKRGGGN KVEPFRPAFR
GTVSEKLQLE TELARAVERG ELTMVYQPIV RLDDEELAGF EALMRWEHPK RGTISPSEFI
PLAESCDLIM PLGMFALERA ATDLVEWEKQ TGEMPIFVSV NLSSAQLINN TLYTDIRSLL
SRVNCNPARL KLELTESVVV ENPEQARLVL EKLKDIGLSL ALDDFGTGYS SLSYLTRFPF
DTLKLDRELV TDTSERRNIL LRSVIGMAKD MGMDVVAEGI ASEDDGDELA QMGCHYGQSF
LYGAPVGPEA VMRLLKDQQQ RAKRA
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