Gene Avi_1055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1055 
Symbol 
ID7387139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp891897 
End bp892499 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content56% 
IMG OID643650547 
Producthypothetical protein 
Protein accessionYP_002548755 
Protein GI222147798 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATTC TCGGAATTTC GTACCTGGCA TTAGCCCTCT ATTACTGGAC AATGTCCGTC 
ACACCCGGCC CCAACAACGT CATGCTGACG ATGTCGGGCG TCAACTTCGG CTTCACGCGC 
ACCGGCCCGC ATATTCTGGG CATTGCCATG GGCTGCGCGG TACAGACATT CTTGCTGTGC 
GTCGGCTTTG GTATTCTGTT TGACTATTTT CCGGCGCTGC AAACCCTGCT GAAATGGGCG 
GGCGCTGCCT ATCTGATCTA TCTTTCCCTG AAGCTGATCG GCGCCAGGGT TGCCAATGCC 
AAATCCGCGC CACAGCCCCT GACCTTTATT GAGGCGGCGT CGTTTCAATT CATCAACCCG 
AAGGCATGGG TCAAGGCGAC AACAACAGCG TCGATCTTCA TGCCGACCGG AACCTCCATC 
CTTGCTTCCG GCGTGGCGAT TTTTACCGTC TGCACAGCTG TGAACATCGT CTCTTCATCG 
CTCTGGGCCA GTTTCGGGGT CGGCATCCGC TCGCTTCTGT CCAATCCGAC CTATCTGCGC 
GTGTTCAATT ACACCATGGC CGCGCTGCTG ATCGGCACCG CGATCTATGT CGTCATGAAC 
TGA
 
Protein sequence
MTILGISYLA LALYYWTMSV TPGPNNVMLT MSGVNFGFTR TGPHILGIAM GCAVQTFLLC 
VGFGILFDYF PALQTLLKWA GAAYLIYLSL KLIGARVANA KSAPQPLTFI EAASFQFINP 
KAWVKATTTA SIFMPTGTSI LASGVAIFTV CTAVNIVSSS LWASFGVGIR SLLSNPTYLR 
VFNYTMAALL IGTAIYVVMN