| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1052 |
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| Symbol | ispH |
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| ID | 7387136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 888097 |
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| End bp | 889131 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650544 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_002548752 |
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| Protein GI | 222147795 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.308304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACTG CAATGGACAA AACGCTTTTG GAAACCGGCT CGGTAACCCG GTCGCCATTG
ACGATCCGGC TGTGCGGTCC GCGCGGTTTT TGCGCCGGTG TCGACCGGGC GATCCAGATC
GTCGTGCTGG CGCTGAAGGG CTATGGCGCG CCGGTCTATG TCCGTCATGA AATCGTCCAC
AACCGCTATG TGGTTGAGGG GCTGGAGGCC AAGGGGGCTG TCTTCGTCGA GGAACTGGAT
GAAATCCCGG TCGAGCATCG CCAGCAACCT GTGGTGTTTT CCGCCCATGG CGTGCCGAAA
TCCGTGCCGG AAGATGCGCA GAAGCGCAAT CTCTTCTACC TCGATGCCAC CTGTCCGCTG
GTCTCGAAAG TCCATAAACA GGCCATGCGC CATCAACGGC TTGGCCGCCA TGTCATCCTG
ATTGGTCACG CAGGCCACCC GGAAGTAATC GGCACCATGG GGCAATTGCC CGAAGGCACC
GTTTCCCTGG TGGAAACCGT TGAGGATGCC GCCGTCTATC AGCCAATCGA TCCCGAAAAC
CTCGGCTTCG TCACCCAGAC CACGCTGTCG GTGGATGATA CCGCAGGCGT GATTGCCAAA
TTGCAGGAGC GCTTTCCAGA GCTGAAGGCA CCTGCTGCCG ACAGTATTTG CTATGCCACC
ACCAACAGGC AGGAAGCGGT GAAACAGGCA GCGCCCGGCT GCGACCTGTT CGTCACCGTC
GGCGCTCCCA ATTCATCCAA TTCCAAGCGG CTGGTGGAAG TGGCGTTGAA AGCTGGCGCC
AAGCGCTCCA TCCTGGTGCA GCGCGCCAGC GAGTTGGACT GGGACGCCAT CGGTGAGATC
CGCAGCCTTG GCCTGTCGGC GGGCGCATCG GCACCGGAAG TGGTGGTCAA CGAAATCATC
GAGGCCTTCA AGGCCCGCTT CGACGCGACA ATCGAGCTGG CTGAATTTTC GATTGAGAAC
GAAAACTTCC TGGTCAACCG CGAATTGCGC TCCATCGAAC TGACCCAGGA CGACATGGCC
TTCGTCAACG GGTGA
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| Protein sequence | MTTAMDKTLL ETGSVTRSPL TIRLCGPRGF CAGVDRAIQI VVLALKGYGA PVYVRHEIVH
NRYVVEGLEA KGAVFVEELD EIPVEHRQQP VVFSAHGVPK SVPEDAQKRN LFYLDATCPL
VSKVHKQAMR HQRLGRHVIL IGHAGHPEVI GTMGQLPEGT VSLVETVEDA AVYQPIDPEN
LGFVTQTTLS VDDTAGVIAK LQERFPELKA PAADSICYAT TNRQEAVKQA APGCDLFVTV
GAPNSSNSKR LVEVALKAGA KRSILVQRAS ELDWDAIGEI RSLGLSAGAS APEVVVNEII
EAFKARFDAT IELAEFSIEN ENFLVNRELR SIELTQDDMA FVNG
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