| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1045 |
|---|
| Symbol | coxC |
|---|
| ID | 7387132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 885336 |
|---|
| End bp | 886214 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643650540 |
|---|
| Product | cytochrome c oxidase subunit III |
|---|
| Protein accession | YP_002548748 |
|---|
| Protein GI | 222147791 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGACG CCCATCAGAA ACATCATGAC TATCACATCA TCGATCCGAG CCCATGGCCG
ATCCTGGCAT CGCTCGGGGC CTTCATCCTG ACCTTCGGCG GGGTCGGCTA TATGCGCTAC
CTGCATGGTG GCTCGTTCAA GCTGTTTGGC ATGGAGCTAG CGCATCCATG GCTGTTCTAC
ATTGGTCTTG CCATCATCCT GTTCACCATG TTCGGCTGGT GGGCAGATAC GATCAAGGAA
GCCCATGAGG GTCACCATAC GCGGGTCGTG TCGCTGCATT TGCGCTATGG CATGATCATG
TTCATCGCGT CTGAAGTGAT GTTCTTCGTC GCGTGGTTCT GGGCGTTTTT CGATGCCAGC
CTGTTTCCCC ATGAAGCCAT CCAGGCCTCG CGGGTCGAGT TTACCGGCGG GCAATGGCCG
CCAAAGGGTG TCGAAGTGCT CGATCCCTGG CACCTGCCGC TTTATAACAC CGTCATCCTG
CTGCTATCGG GTACCTGCGT TACCTGGGCG CATCATGCCA TGCTGCACAA TGACCGTAAG
GGCATGATCA GCGGCCTGAC GCTGACGGTG GTGCTCGGTG CGCTGTTCTC CTTTGTGCAG
TTCTATGAAT ATATGCATGC GCCCTTCGCG TTCAAAAGCT CGATTTACGG CGCGACCTTC
TTCATGGCCA CCGGTTTTCA TGGTTTCCAC GTGCTGGTTG GCACGATCTT CCTGTTGGTC
TGCCTGTTTC GGGCGCTGAA AGGCGATTTC ACCCCGAAAC AGCATTTTGG CTTTGAGGCG
GCGGCCTGGT ACTGGCACTT CGTCGACGTG GTCTGGCTGT TCCTGTTCTT CTCTATCTAT
ATCTGGGGCG GATGGGGTGC GCCGCTGGCG CATGGCTAG
|
|---|
| Protein sequence | MADAHQKHHD YHIIDPSPWP ILASLGAFIL TFGGVGYMRY LHGGSFKLFG MELAHPWLFY
IGLAIILFTM FGWWADTIKE AHEGHHTRVV SLHLRYGMIM FIASEVMFFV AWFWAFFDAS
LFPHEAIQAS RVEFTGGQWP PKGVEVLDPW HLPLYNTVIL LLSGTCVTWA HHAMLHNDRK
GMISGLTLTV VLGALFSFVQ FYEYMHAPFA FKSSIYGATF FMATGFHGFH VLVGTIFLLV
CLFRALKGDF TPKQHFGFEA AAWYWHFVDV VWLFLFFSIY IWGGWGAPLA HG
|
|---|
| |