| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1041 |
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| Symbol | ctaD |
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| ID | 7387128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 881537 |
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| End bp | 883216 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643650536 |
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| Product | cytochrome c oxidase subunit I |
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| Protein accession | YP_002548744 |
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| Protein GI | 222147787 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.286412 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGGAC ATACCGGCGA GGGCGCTCAT GCACCCGAAC ATTCACACGA TCATTCACAT
GATCACAAAC CGGGCTTTGC CGCCCGCTGG CTGTTTTCGA CCAATCATAA GGACATCGGC
ACGCTCTACC TGATCTTCGC CATTATCGCG GGCGTGATCG GCGGGGCGCT GTCGGTTGCC
ATGCGCATGG AATTGCAGGA GCCTGGCATC CAGATCTTCC ACGGTCTGGC TGCGATGGTC
TACGGCTTTG AGGGCGATGC CGCCATCGAT GGCGGCAAGC ACATGTATAA TGTGTTCACC
ACCGCACATG CGTTGATCAT GATCTTCTTC ATGGTCATGC CAGCGTTGAT CGGCGGTTTT
GCCAACTGGA TGATCCCGAT CATGATCGGC GCGCCGGATA TGGCGTTTCC GCGTCTCAAC
AACATCTCCT TCTGGCTGAT CGTTCCGGCC TTCGTACTGC TCCTTCTGTC GATGTTTGTC
GAAGGCCCTG CAGGTGCTTA TGGTGTCGGC GGCGGCTGGA CGATGTATCC GCCCTTGTCG
ACCTCCGGCC AGCCTGGCCC GGCGGTGGAC CTGGCGATCT TCGCACTGCA TGTGTCGGGT
GCCTCGTCTA TTCTCGGCGC CATCAACTTC ATCACCACCA TCCTCAACAT GCGCGCGCCG
GGCATGACCC TGCACAAGAT GCCGCTGTTT GCCTGGTCGG TGTTGGTCAC GGCTTTCCTG
CTGCTTCTGT CCCTGCCGGT TCTGGCCGGT GGCATCACCA TGCTGTTGAC CGACCGTAAT
TTCGGTACGA CATTCTTTGC CCCCGAAGGC GGTGGTGATC CGATCCTCTA CCAGCACCTG
TTCTGGTTCT TCGGACATCC GGAAGTCTAT ATCCTGATCC TGCCCGGTTT CGGCATCGTC
AGCCATATCA TCTCGACCTT CTCGAAAAAG CCGGTTTTCG GCTATCTCGG CATGGCCTAT
GCGATGGTGG CCATCGGCGC CGTCGGTTTC GTGGTCTGGG CGCATCACAT GTATACGGTC
GGCCTGTCGC TGTCGGCCCA ACGCTATTTC GTCTTCGCAA CCATGGTGAT CGCAGTGCCG
ACCGGCATCA AGATCTTCTC GTGGATTGCC ACCATGTGGG GTGGCTCGCT GTCCTTCCGC
ACTCCCATGG TCTGGGCCAT CGGCTTCATC TTCCTGTTCA CCGTTGGTGG TGTAACAGGC
GTGCAGCTGG CCAATGCCGG TCTCGACCGT TCGCTGCATG ACACCTATTA CGTGGTGGCC
CATTTCCACT ATGTTCTGTC GCTGGGTGCC GTGTTTGCAA TTTTCGCTGG CTGGTATTAT
TGGTTCCCGA AAATGTCGGG CTATATGTAT AGCGAGTTCA TCGGAAAGCT GCATTTCTGG
GTGATGTTCA TCGGCGTCAA CATGGTGTTC TTCCCGCAGC ACTTCCTGGG ATTGGCTGGT
ATGCCGCGTC GATATATCGA TTACCCGGAT GCCTTTGCCG ACTGGAACCG GATTTCATCC
TACGGCTCCT ATCTTTCAGG CGTCGCGGTG CTGATCTTCC TGTTCGGCGT GTTCGAGGCT
TTCGCCAGGA AGCGTGTGGC AGGCGACAAC CCATGGGGTG AAGGTGCGAC CACACTGGAA
TGGCAGCTGT CTTCGCCGCC GCCATACCAC CAGTGGGAAC AGTTGCCCCG CATAAAATAG
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| Protein sequence | MAGHTGEGAH APEHSHDHSH DHKPGFAARW LFSTNHKDIG TLYLIFAIIA GVIGGALSVA
MRMELQEPGI QIFHGLAAMV YGFEGDAAID GGKHMYNVFT TAHALIMIFF MVMPALIGGF
ANWMIPIMIG APDMAFPRLN NISFWLIVPA FVLLLLSMFV EGPAGAYGVG GGWTMYPPLS
TSGQPGPAVD LAIFALHVSG ASSILGAINF ITTILNMRAP GMTLHKMPLF AWSVLVTAFL
LLLSLPVLAG GITMLLTDRN FGTTFFAPEG GGDPILYQHL FWFFGHPEVY ILILPGFGIV
SHIISTFSKK PVFGYLGMAY AMVAIGAVGF VVWAHHMYTV GLSLSAQRYF VFATMVIAVP
TGIKIFSWIA TMWGGSLSFR TPMVWAIGFI FLFTVGGVTG VQLANAGLDR SLHDTYYVVA
HFHYVLSLGA VFAIFAGWYY WFPKMSGYMY SEFIGKLHFW VMFIGVNMVF FPQHFLGLAG
MPRRYIDYPD AFADWNRISS YGSYLSGVAV LIFLFGVFEA FARKRVAGDN PWGEGATTLE
WQLSSPPPYH QWEQLPRIK
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