| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1017 |
|---|
| Symbol | |
|---|
| ID | 7387110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 861836 |
|---|
| End bp | 864991 |
|---|
| Gene Length | 3156 bp |
|---|
| Protein Length | 1051 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650518 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_002548726 |
|---|
| Protein GI | 222147769 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGGT ATAATGTGTA TGGCAGGATA ATGACAGAAT TCGTAAATCC CGCCGATCTC
CAAACACGCC GTTCCAGCAA TGTGGCGATG GCGTTATTGG CCCTGGCGTT TGTCCTGCTG
ACAAGCCTGC TTGCCTATAT CGGTTATCTC AATATCACCG ACTACCGCGG CCAATTGCGC
AGGCAAGTCC AAGCGGACCT GCAGCGGGTC AGCGGGATGA TGACCCAAAG AACCGAGGAG
AATTTCTTCG CGCTTCGGCA TCTTGTCCAT GCATTGTCAC CGCTTGAAGG CGCTTTGGCC
TCGCCACAAA CGGAGGGGCT TGTTCGCGGT ATTCTAAGGG AACGTCCGGA ATTTCGAGCT
TTGGCGCTGG CCCGCGGCAC TGTCATAGAA CAGGTGTGGA CGCAGCAAGG GCTCTCCCCC
CGGACCAGCA TGACGATCGG TTCGGATTCG GACACGGATA TGCTATTGCT GGATGACGGG
CAATTGCAAC TGGATCTCAC CGCCGCCGAT GTGACGCCCT CCCCTATCCA TGTCCGTGCC
ATTCTGGATA CCGCCAAATT CATCCAGTCC GCCATCGCCG ATGGCGCCAC CGCTCCGGTC
GGCAACGGAC CGGCTATCGA GATTGCCGTC ATGGTGCAGA CCGCATCCGG TACGCGCACT
GTTTTTGGTA GCCCGTCGCT CGCGACTGAG GATTTGGCCA GGCCGGATTT GGTCAAGCAG
AACATCACCG GGGAAAACCC GGAAATACTG ACCATGGCGC TTCAAGGCGG GACGCTGCAA
GTGTATGGCC GCCCCCGGGC AGGCTGGCAG CAGAAGCCGC AGGATCACAG TAATTTCGTC
ATGACGCTGG TTGCCGTGGA TCTGGCTTTT GCAGCACCGC TTTGCGGCAT AGCAATGCTT
TTCATCTCCC GTGCCAAACG CCGGCGTGCG CTCCAGCAGA TGGAAGACAA GTACCGGGCC
TTGACCCGGC GTTTCGAACT GGCAATGGAC AGTTCCAATA TCGGCATGTG GGAACTTGCA
ACCGGCAATC CGACCCTCCA TCAAGACAGC CGTGCCGCAC AATTGCATGG ATCAGGCAGC
GGCGGCGATC TCGATCAGGA CATGACCCGC TGGTTGGAAA CCGTGCATCC GGAAGACCGC
GCCAAGGCGA AAGCCCATGT TATGGCCTGC CAGCAAGGCG AAAACAGCCA GGATTACCGG
GTCGTGCTGG AGAGCGGCGT GATCCGCACC TTGCGCTCCG TCGGCAGCCA TGCGGATGCC
TCCGGGCATA ACCGGGTGAC GGGTCTCGTC TGGGACATTA CTGCCGATGT CGCCATGCAA
AATGACCTCC GAGCTGCCAA GGAGAGCTCA GACATCAAGA ATGCGGAGCT GGAACTGGCC
CTGGACGAGT TGTCCATCCG AGAGCAGCAG TTGGAAAGCC TGTCCTATCG GTTTGAACTG
GCGCTGGATT CCTATGGCTG CGGCGTCTGG GAACATGATT TTTCCACAGG CCACACCGTC
TGGGACGAAC GCATGTGCTA TCTCTATAAT ATTCCGGCCA CCAGCAGTCA TATCACCGAC
GCATTGTGGC TGAGCAAGAT CCATAAAGAC GACCACGAAA TGTTGATGGA GGCCGCACGC
AACGCGGTAA AGCAGCATAC GCGCCTCAAC ACCAGCCAGC GGGTATTGTT GGACCAGGGC
GGCACACGCT GGGTGCGCTC CGTTGGTCAG GTGCATGTCG ACCGTAACGG ACGCAAAAAG
CTGATCGGCA TCAGCTTCGA TGTGACGGCC GACGTGCTGC TGACAGAAGA ATTGCGCACG
GCGAAGGCCG AGGCGGAAGC GCGCAATATC GAGCTTGAAC TGACCAAGAA CCGGATCGAA
TTCAATGCCT TGCATGATCC ACTGACCGGC CTTGCCAATC GTCGCAAGCT GGATATCGCC
CTGGATAGCC TGACGCGGCA GTCCCAGGCA AACAGAAGCC GCTTCACCAT TCTGCATCTC
GATCTGGATC GGTTCAAGGA AATCAACGAC ACGCTGGGCC ATGCCGCTGG CGATGCCATG
CTGGTCAATG CGGCACGGGT TCTGTCACGC CACATGAACA GCGGCGATCT GGTGGCGCGG
ATTGGCGGAG ACGAATTCGT CGTTCTCCTG CATGGGCCAA TCGATGCCAA GGCCGCCGCC
GAGCTTGCCG AACGCATCAT CCAGGACATC AACATACCCG TGGATTTCGA GGGCTTCATC
TGTCGCTGCG GCGTTTCCAT CGGCATTGCC GAGGCCAAGG GACTGCGAAC CGATGCCCGC
AAGATCCTGA TCAATGCCGA TCTGGCGCTT TACGAGGCCA AGCGGCAGGG CCGCAACTGT
TTCCAATTCT TCACGGACAA TCTCCAGGCC AATATTGTCA GTTCGAAGCG CATTGCCGAC
GAATTGCTGC ATGCCCTTGA AAATGACGAG ATCACCGCCT GGTACCAGCC GCAATTCTGC
GCCAACAGCA TGGAACTGGT CGGCGCCGAG GCGCTGGTCC GCTGGCAGCA TCCAACCCGC
GGCATCCTGC CCAGCAACAG CTTCCTGAAA GTGGCGGAAG ACCTGAATGT CATGGCGCGG
ATCGACCAGA TCGTGCTGGA ACTGGCGTTG AAGGACAAGA TGCGATGGGC CGCCATGGGG
GTGAAACTGC CCAAGATTTC CGTCAATGTC TCTTCCCGCC GCCTGCATGA TGCCGGGCTG
ATCGAGACGC TGGAAAGTCT CAGCATTTCA CCCGGCGAAA TTTCCTTCGA ACTGGTCGAA
TCGATCTTTC TCGATGAAAG CGAGGATATT GCCACCACCA ATATCGAGCG GATCAAGGCG
CTGGGCATCG ACATCGAGAT CGACGACTTC GGCACGGGCC ACACCTCGAT CATCAGCCTT
TTGAAACTGC AACCCAAGCG GCTGAAGATC GACCGGCAAT TGGTGATGCC CCTGCTCAAT
TCCAGCCGGG AACGGGCCAT GGTGCGCTCG ATCATCGACA TCGCCCGCTC TCTTGGAGTG
GCAACCGTGG CCGAGGGCGT CGAAAGCACC GCCCATGCCC AGATCCTGCG CGAATTGGGC
TGCGACCTCT TGCAAGGCTA CGCTTTTGCA AAACCACTCC CCTTCGAGGA ATTCGGCCGT
TTCGCCTTGC AGACAGACCG CCAGATGGCG TCATAA
|
|---|
| Protein sequence | MPRYNVYGRI MTEFVNPADL QTRRSSNVAM ALLALAFVLL TSLLAYIGYL NITDYRGQLR
RQVQADLQRV SGMMTQRTEE NFFALRHLVH ALSPLEGALA SPQTEGLVRG ILRERPEFRA
LALARGTVIE QVWTQQGLSP RTSMTIGSDS DTDMLLLDDG QLQLDLTAAD VTPSPIHVRA
ILDTAKFIQS AIADGATAPV GNGPAIEIAV MVQTASGTRT VFGSPSLATE DLARPDLVKQ
NITGENPEIL TMALQGGTLQ VYGRPRAGWQ QKPQDHSNFV MTLVAVDLAF AAPLCGIAML
FISRAKRRRA LQQMEDKYRA LTRRFELAMD SSNIGMWELA TGNPTLHQDS RAAQLHGSGS
GGDLDQDMTR WLETVHPEDR AKAKAHVMAC QQGENSQDYR VVLESGVIRT LRSVGSHADA
SGHNRVTGLV WDITADVAMQ NDLRAAKESS DIKNAELELA LDELSIREQQ LESLSYRFEL
ALDSYGCGVW EHDFSTGHTV WDERMCYLYN IPATSSHITD ALWLSKIHKD DHEMLMEAAR
NAVKQHTRLN TSQRVLLDQG GTRWVRSVGQ VHVDRNGRKK LIGISFDVTA DVLLTEELRT
AKAEAEARNI ELELTKNRIE FNALHDPLTG LANRRKLDIA LDSLTRQSQA NRSRFTILHL
DLDRFKEIND TLGHAAGDAM LVNAARVLSR HMNSGDLVAR IGGDEFVVLL HGPIDAKAAA
ELAERIIQDI NIPVDFEGFI CRCGVSIGIA EAKGLRTDAR KILINADLAL YEAKRQGRNC
FQFFTDNLQA NIVSSKRIAD ELLHALENDE ITAWYQPQFC ANSMELVGAE ALVRWQHPTR
GILPSNSFLK VAEDLNVMAR IDQIVLELAL KDKMRWAAMG VKLPKISVNV SSRRLHDAGL
IETLESLSIS PGEISFELVE SIFLDESEDI ATTNIERIKA LGIDIEIDDF GTGHTSIISL
LKLQPKRLKI DRQLVMPLLN SSRERAMVRS IIDIARSLGV ATVAEGVEST AHAQILRELG
CDLLQGYAFA KPLPFEEFGR FALQTDRQMA S
|
|---|
| |