| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0986 |
|---|
| Symbol | mmgC |
|---|
| ID | 7387086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 835119 |
|---|
| End bp | 836894 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650494 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002548702 |
|---|
| Protein GI | 222147745 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAGG CCCCCGTGGA GGAGATTGCC TTTACCCTGA AACAGGTTGC CGGCATGGCG
CAGGCGTTGG AAGAGGGCCG GTTCGGCGAC CTTTCCGAGG ATTTGACCGA TGCCATTCTG
GAAGAGGCTG GCCGGTTTGC CGCCAATGAA ATCGCGCCGC TGGCCGCAAA TGGCGACCGG
CAGGGCGCGA AACTGGTGGA TGGCAAGGTG CAATTGCCGG ATGGCTGGGC GGATCTCTAT
CGTCGCTGGG CCGAAGGCGG CTGGAACGGG TTGGTGGCCG AGGAGCGCTA TGGCGGCCAG
GGCCTGCCAC ATCTGCTCAA TGTCGCAGCA CTGGAAATGT GGAATTCCGG CTCCATGGGC
TTTGCACTGG GCCCAGTCCT GACCATGGGC GCTTCAGAGG CATTAACGGC CCATGGCAGC
GAGGCCTTGA AGGAAAAATT CCTGCACAGA ATGGTCTCCG GTGAATGGAT GGCCAGCATG
AATCTCACCG AGCCCCACGC TGGCTCTGAT CTGGGTGTGA TGAAAACCCG TGCCGAGCGC
CAAAACGATA GCACCTATCG GATTTTCGGT CAGAAGATTT ACATCACCTG GGGCGAACAC
GACGCCACAG ACAATATCAT CCATCTGGTT CTGGCACGGC TTCCCGATGC GCCTGCGGGT
ACACGCGGCA TCTCGCTGTT TCTGGTGCCG AAATTCCTGG TGAATGACGA TGGCTCGCTT
GGTGCGCGCA ATGACCTGTT TTGCCATTCG CTGGAGCATA AGCTGGGCAT TCACGGCTCT
CCCACCTGCA CGATGATTTT TGGCGATGGC CGGTTTGGCG ATGATCCGGG CGCGATTGGC
TATGTGATCG GTGAGGAAAA CAAGGGTCTG GCCTGCATGT TCACGATGAT GAACAATGCG
CGGCTGGCCG TCGGCATGCA GGGTGTGGCG ATTGCCGAAG CCGCCACCCA GCTGGCGACC
GCCTATGCAA GAGAGCGCAC CCAGGGCAAG GCGCCGGGCT GGACGGGTGC GGGCATGAGC
CCGATCATTG AACATCCGGA TGTGGCCCGC ACGCTTTTGA CCATGAAGGC GCTGACCCAA
GGGGCGCGGG CCATCTGCTA TTCCTGCGCC CATGCCATCG ACATGAGCCA CCACAGCGAA
GGCGATGAGG CCCGCCACTG GCAGGCGCGT GCTGCGTTTT TGACGCCGAT TGCCAAGAGC
TTTGCCACCG ATATCGGCGT CGATGTCGCC TCGATGGGCA TTCAGGTGCA TGGCGGCATG
GGCTTTATCG AAGAGACGGG CGCTGCCCGC CTGCTGCGCG ACGCCCGAAT CGCTCCGATC
TACGAAGGCA CCAACGGTAT CCAGGCGATT GATCTTGTGG TGCGCAAGCT GCCGCTGGCC
GAGGGCGCGC ATGTGCGTGG CTTCCTCAGC GAGTTGAAAG CTCTTGCCGT GGCTGTCGAT
GCCAGCAATC GGCCCGGCTT CGGCGAAACG GCGACCCGGC TGCTTGCCGC GATCCGCGAT
CTCGAAGATG CGACGGAATA CCTGTTGGCC CGGCTAGGCG AGGGTGCGCA GGTTGACGCC
TTGGCTGGTG CAACGCCCTA TCAGCGGCTG TTTGGCCTGA CCCTGACCGG CGCCTATCTG
GCCAAGGGGG CTTTGGCGCA GGGGGAAGAC GACAAGCGCG TGGCGCTTTG CCGGTTCGTG
GCCGAAAACC TGCTGGCGGA AAGTTCCGGC TTGAAACAGG CGGTGGTCGG CGGTGGGGCT
AGTCTTGCTG CTGCCCGCAC CGTGCTGGAG GCCTAA
|
|---|
| Protein sequence | MYKAPVEEIA FTLKQVAGMA QALEEGRFGD LSEDLTDAIL EEAGRFAANE IAPLAANGDR
QGAKLVDGKV QLPDGWADLY RRWAEGGWNG LVAEERYGGQ GLPHLLNVAA LEMWNSGSMG
FALGPVLTMG ASEALTAHGS EALKEKFLHR MVSGEWMASM NLTEPHAGSD LGVMKTRAER
QNDSTYRIFG QKIYITWGEH DATDNIIHLV LARLPDAPAG TRGISLFLVP KFLVNDDGSL
GARNDLFCHS LEHKLGIHGS PTCTMIFGDG RFGDDPGAIG YVIGEENKGL ACMFTMMNNA
RLAVGMQGVA IAEAATQLAT AYARERTQGK APGWTGAGMS PIIEHPDVAR TLLTMKALTQ
GARAICYSCA HAIDMSHHSE GDEARHWQAR AAFLTPIAKS FATDIGVDVA SMGIQVHGGM
GFIEETGAAR LLRDARIAPI YEGTNGIQAI DLVVRKLPLA EGAHVRGFLS ELKALAVAVD
ASNRPGFGET ATRLLAAIRD LEDATEYLLA RLGEGAQVDA LAGATPYQRL FGLTLTGAYL
AKGALAQGED DKRVALCRFV AENLLAESSG LKQAVVGGGA SLAAARTVLE A
|
|---|
| |