| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0978 |
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| Symbol | |
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| ID | 7387079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 825667 |
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| End bp | 826737 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650487 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002548695 |
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| Protein GI | 222147738 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCCTA TGAAAAATCC GGCCTCCAGC ATTGCGCTGC GTGTAGCGAC AGCCATGCAT
CAGATGGGGA TCGAGGGTCT GCCGCGCAAT TACGAGCTGG TCTATGAAGC CTATTCCGGT
AGCAACCCGG ATCTGGTGCG CGAGTTCATT GCGCTCGGCA AGGTCAAGAC CCAGGATGCG
CTGGACGCGC TCGGTCGCAA ATATCTGCCC CATCACCATG AAGACGGTCT TCTGGCCCGT
CACAATAACA AGGTACGTGC CGAAATGAGC AGCTTCATCA GCCTGCTCAA CCAGGAAAAA
CTGTCGCTGA CCGATTATGG CCGCCTGATC GGCGACGCCA CCAAGGGCAT CCTGACCGAC
ACCGACCTTG GCAACCCGGA ACTGAGCCGC TCCATCCAGG CGCTGAAAGC CGCCACCGAC
CAGCGCGTTG CCGAAAACAG CAATGTCGTC AAAACCGTGG TGGAAAAGAC CGAGCAGCTC
GCCGATGTGC AGCGCGAGGC CGATCAGGTG GAACAGGCGA AATTCGTCGA TCCGCTGACC
GGCATGGGCA GCCGCCGTGC CTTTAATAAA GCCTTGGCAA AGGTCTATGC CAACCCGGCC
CTGCCGACGC TGTGCGGCCT GGCGGTCGGT GAAATCGACG ATTTCGCCAA GCTCGCCGAT
CATCTTGGTC CGACGGTGAC CGAGCGCTTC ATCAAGCAGA TCGCCAAGGT GGTAAAGGCC
GTGGCCGGTA AGGACGACCT CGCCTGCCGC TTCGACGGCA GCCGTTTCGG CCTGTTGTTC
TACACCTCCG ACCAGGACGA AATCAGCCGC ATCGTCAACG CGGTGCGCGT CAAGCTGAAG
GCCACCGCCG TGGTCAATGC CGGCTCTAAC GGCTCACTCG CCGCACTCAC CATGTCCTTC
GGCATCTGCC TTTCCGAACA GGCCCCCAAC GCCTTCGATC TGATGAGCTA TTCCGAACGC
GCCCTCACGG CCTCCAAATC CTCCGGCGGC GATACCGTGA CCCTCTATGG CGTGACAGAA
AACAGCTATG TGCCGAAGGA TTGGCTGATC TACAAGCCGC ATGTGGTGTG A
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| Protein sequence | MQPMKNPASS IALRVATAMH QMGIEGLPRN YELVYEAYSG SNPDLVREFI ALGKVKTQDA
LDALGRKYLP HHHEDGLLAR HNNKVRAEMS SFISLLNQEK LSLTDYGRLI GDATKGILTD
TDLGNPELSR SIQALKAATD QRVAENSNVV KTVVEKTEQL ADVQREADQV EQAKFVDPLT
GMGSRRAFNK ALAKVYANPA LPTLCGLAVG EIDDFAKLAD HLGPTVTERF IKQIAKVVKA
VAGKDDLACR FDGSRFGLLF YTSDQDEISR IVNAVRVKLK ATAVVNAGSN GSLAALTMSF
GICLSEQAPN AFDLMSYSER ALTASKSSGG DTVTLYGVTE NSYVPKDWLI YKPHVV
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