Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0941 |
Symbol | ispE |
ID | 7387730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 790279 |
End bp | 791151 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650458 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_002548666 |
Protein GI | 222147709 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGTAT TTCGTGAAAT TGCAGCGGCA AAGATCAATC TTGCCCTGCA TGTCACGGGC AGACGGGATG ATGGCTACCA CCTTCTCGAT ACGCTCGTGA CATTTGCCGG ACATGGCGAC GTGATCACCG TTGAAGCGGC CCGACAGGAT GAATTTACCC TGTCGGGGCG CTTCGCAGGC CAGCTTCAGT CGGAGGATCC GGCTGGAAAC CTGGTTATTC GGGCGCGGGA TCTGTTGCGA ACAGCCACTC TGGCCAAGGG CCTGCCTGCC CCGTCCGTTG CCATCTCCTT ACAAAAAAAT CTGCCAATTG CGTCCGGCAT TGGTGGCGGT TCAGCCGATG CCGCAGCCAC GCTGAGGGCT TTGCAGCACC TATGGGAAAG CCATCTTGAG CCAGCCGCCT TGGAGGATCT GGCCCTAAAG CTGGGAGCAG ATGTGCCGAT GTGCCTTGCA AGCACATCCT TGCGCGCCAC AGGCATTGGC GAAGACCTGA CACCCCTGCC GGCCTTGCCA CGCTTTGGCC TCCTGCTCGG CAATCCGTTG CAGGCGGTGT CCACACCAGC GATCTTCAAG GCGATGACCA GGCGCGACAA TCCACCGATT GGCCCGCTGC CAACGCTGAT GGACCAAGAC CCATGGATAG AGACGCTCCG CCGATTGCGT AATGATCTGC AACCCGCCGC CGAAACCTTG TGTCCGCACA TTGCCGAGCT TTCCCGGATG ATCGAAGCAA CCGGCGCGCT TGTCACCCGG ATGTCCGGCT CCGGCGCCAC CTGTTTTGGC CTTTACCCCA CCTATGACGC TGCATTTGCC GCTGAAAAAG CGCTTCTCAC GGCGCGGCCG GATTGGTATT TTCAGGCGAG CCAGACCCTA TAG
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Protein sequence | MTVFREIAAA KINLALHVTG RRDDGYHLLD TLVTFAGHGD VITVEAARQD EFTLSGRFAG QLQSEDPAGN LVIRARDLLR TATLAKGLPA PSVAISLQKN LPIASGIGGG SADAAATLRA LQHLWESHLE PAALEDLALK LGADVPMCLA STSLRATGIG EDLTPLPALP RFGLLLGNPL QAVSTPAIFK AMTRRDNPPI GPLPTLMDQD PWIETLRRLR NDLQPAAETL CPHIAELSRM IEATGALVTR MSGSGATCFG LYPTYDAAFA AEKALLTARP DWYFQASQTL
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