| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0891 |
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| Symbol | |
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| ID | 7387697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 752660 |
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| End bp | 753961 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650425 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002548633 |
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| Protein GI | 222147676 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.331841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGACGGGGC TTGGCAATCA CCATAGGCTG CAGGAGCGAA TCCGCAGCCT ATCGGCGGAG
CGCGCCGCCG ATCCCGCACC ATTTACCGTG GCTTTGGTCA ATCTGGACGG TTTCAAGCCA
ATCAACGACC TATTCGGGTC GTTGGCGGGG GATGAAATTC TGTGCCAGGT CGCCCATCGT
CTCAAAGCCT GTATTCCCGA TGGCGCCATT GTTACCCGTC ACGATGGCGA CGAGTTTGCC
GTGGTCCTGC CGCTGATTTT CGAACAGATC AGCGCCGAGC GAATCGGCAA TCTGATCAAG
GACGTGCTAT CGGCGCCCTA CGACCTCGGC GACCGCAATG TCCGGCTTTC GGCTTCGCTG
GGCTTTGCAA TCTTTCCCTT TGCCGGCGAC GATTTCGAGA CGCTGATGAA GAGTGCGGAG
ACGGCTCTTT ATCGCTCAAA ACGGCGCGGA CGCGGCCAGA TAACCGTCTA TTCGCGAGAA
ATTGCCCAGG AAATGCGCCG CTCCACCCAA TTGGAGCAGG CCCTGCGCAA TGCGATCATC
AACGATGCCG TCGATACCCA TTTCCAGCCG ATCGTCTCGC TTGTCGATGG CAAGGTTCTG
GGTTTCGAAG CGCTCGCTCG CTGGATCGAT CCAGATCTCG GCTTTGTTTC GCCAGCGATC
TTCGTGCCAC TGGCCGAGGA TAGGGGCTTT ATCGACACGC TGTCGGAAAC CCTGTTGCGC
AAGGCTGCGG AAGCGGCACT GACCTGGCCG CGAGAACTGT TTTTGTCGTT CAACCTTTCC
TCGGTGCAAT TGACCGATTC CGGCACGGCC TCACGCACGC TGTCCATCAT CAACAGCGTC
GGCCTCGACC CGTCGCGGCT GGAACTGGAA ATTACCGAGA CCGCTGTGAT GAGTTCCGCC
GACATGGCCG GGCGGATCAT CGCCGAACTG CGCGCAGCAG GCGTGCGTAT CTCGCTCGAC
GATTTTGGCA CCGGCCAATC CAGCCTTGGG CGCTTAAGGG AATTTACGTT TGACAAGGTC
AAGATCGATC GAGCCTTCGT CTCGGCGATC ACCACCGACA CCACCTCCGA ACATATCGTC
CGGGCGATCA TCACCATGTG CGAAGGCCTG AAGCTGGAAG TAGTGGCCGA AGGCATAGAA
ACCCTAAGCG AAGCAACAAG GCTCCTGGCC CTCGGCTGCA CCATGGGCCA GGGCTATTAT
TTCGGCAGGC CCGCCGATGC GATGGCCACG CTGCGCTATC TATCGCGCCA ATATTCCGAC
TTCGCCGCTC GCAGGCAGAC GGGGCCGTTT TCAGGCTATT GA
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| Protein sequence | MTGLGNHHRL QERIRSLSAE RAADPAPFTV ALVNLDGFKP INDLFGSLAG DEILCQVAHR
LKACIPDGAI VTRHDGDEFA VVLPLIFEQI SAERIGNLIK DVLSAPYDLG DRNVRLSASL
GFAIFPFAGD DFETLMKSAE TALYRSKRRG RGQITVYSRE IAQEMRRSTQ LEQALRNAII
NDAVDTHFQP IVSLVDGKVL GFEALARWID PDLGFVSPAI FVPLAEDRGF IDTLSETLLR
KAAEAALTWP RELFLSFNLS SVQLTDSGTA SRTLSIINSV GLDPSRLELE ITETAVMSSA
DMAGRIIAEL RAAGVRISLD DFGTGQSSLG RLREFTFDKV KIDRAFVSAI TTDTTSEHIV
RAIITMCEGL KLEVVAEGIE TLSEATRLLA LGCTMGQGYY FGRPADAMAT LRYLSRQYSD
FAARRQTGPF SGY
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