Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0850 |
Symbol | |
ID | 7386324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 726307 |
End bp | 726984 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643650396 |
Product | two component response regulator |
Protein accession | YP_002548605 |
Protein GI | 222147648 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.709175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGAAAG TTATCCTTAT TGAGGATGAT GAAGATACGG CACAAGATAT CTGCGCTGAG CTGAAAGATT ACGGATACGC CGTTGACTGG GAATCCGATG GTGCCAGGGG CCTTGAACGC GCAAGGAATG GCGGGGCAGA TATCCTGATC GTTGACCGTA TGCTGCCTGG TATGGATGGC CTTGCTGTGA TTGATACATT GCGGCGCGAA CAGGTTCGCA CGCCTGTGCT TGTCATCAGT GCCCTCAGCG CCGTCAACGA CCGTGTGCGC GGCCTGCGGG CCGGTGGCGA CGACTATCTC ACCAAGCCCT TTGCGATCCT CGAACTTGTC GCCCGCGTGG AAGCCCTTCT TCGCCGCCCC GCTGACATGT CGGCAAAAGT GCTGCGGGTT GGACCGCTTG AGCTTGACCT TCTGGAGCGC AGCGCTTGCC GCGGCGAAAG AGAGATTGAG CTTCTTCCCC GTGAATTCAA GCTGCTCGAA TATATGATGC GCCATTGCGA ACAGCTTCTG ACGCGAGGAA TGCTGTTTGA GGAAGTCTGG AAATATAAAT TCGTTCCCGA TTCAAACCTC ATCGATGTGC ATATGGGTCG GCTCAGGCGA AAAATTGATC ATCCGGGAGA TCACCCGATG ATCTCCAATG TTCGTGGAGA AGGTTTTGTA CTTCGCGCGC CCGATTGA
|
Protein sequence | MAKVILIEDD EDTAQDICAE LKDYGYAVDW ESDGARGLER ARNGGADILI VDRMLPGMDG LAVIDTLRRE QVRTPVLVIS ALSAVNDRVR GLRAGGDDYL TKPFAILELV ARVEALLRRP ADMSAKVLRV GPLELDLLER SACRGEREIE LLPREFKLLE YMMRHCEQLL TRGMLFEEVW KYKFVPDSNL IDVHMGRLRR KIDHPGDHPM ISNVRGEGFV LRAPD
|
| |