Gene Avi_0838 details

Gene Information

• Locus tag: Avi_0838
• Symbol: rirA
• ID: 7386317
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 719709
• End bp: 720179
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643650389
• Product: iron-responsive transcriptional regulator
• Protein accession: YP_002548598
• Protein GI: 222147641
• COG category: [K] Transcription
• COG ID: [COG1959] Predicted transcriptional regulator
• TIGRFAM ID: [TIGR00738] rrf2 family protein (putative transcriptional regulator)

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCTTGA CGAAGCAGAC CAATTACGCG GTACGCATTC TGATGTATTG CGCGGCGAAC 
AAGGACCACC TGAGCCGTAT TCCGGAAATT GCCAAGGCCT ATGGTGTCTC TGAACTGTTC 
CTGTTCAAGA TCCTTCAGCC GCTCAACAAG GCAGGCCTGG TGGAAACTGT GCGTGGCCGC 
AATGGCGGCG TGCGCCTGGG TCGTGCGCCT GAAAAGATCA GCCTGTTCGA TGTGGTCAAG 
GTCACGGAAG ACAGTTTTGC GATGGCCGAA TGCTTCGAGG ATGATGGCGA GGTCGATTGC 
CCGTTGATCG ACAGCTGCGG CCTGAATTCG GCGCTGCGCA AGGCGCTCAA TGCTTTCTTC 
GCGGTGCTGG CGGAATATTC CATCGACGAC CTGGTCAAGG CCCGCCCGCA GATCAACTTT 
TTGCTGGGTA TCGAGGATCT GCCTCGTCTG GCAGCTGCAC CGGCTGCCTG A 

 

Protein sequence

MRLTKQTNYA VRILMYCAAN KDHLSRIPEI AKAYGVSELF LFKILQPLNK AGLVETVRGR 
NGGVRLGRAP EKISLFDVVK VTEDSFAMAE CFEDDGEVDC PLIDSCGLNS ALRKALNAFF 
AVLAEYSIDD LVKARPQINF LLGIEDLPRL AAAPAA