| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0827 |
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| Symbol | pleC |
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| ID | 7386309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 708276 |
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| End bp | 712508 |
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| Gene Length | 4233 bp |
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| Protein Length | 1410 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650380 |
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| Product | two component sensor kinase |
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| Protein accession | YP_002548590 |
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| Protein GI | 222147633 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCTA TCCAATACCC TTTCATTGAT ATCGCCGTGC ACAGCGCGGT CAGGGCCAGG
TTTGCGCGTG GAGATGCACT TGCGCTGTTT TCACTGGATC TGGAACGGGT GCTTTGGGCC
AATGGCGCCG GAGCAGGTTT CTTCGGAACG GCTTCTGTTT ACGATTTCCT CGACCAGGGG
CCACCGCGCC AGGATGTCAC CTTCCGGCAG ATCGCCGCCA TGGCCCGGCA ATTGAAGACA
ACGGGCGAAG CGCGCCGGTT GGTGGTGCGA GCCGGTTCGG GCTTTCGTCT TGTGCCTGTC
GAAGCCCAGC TGGAACGGCT CGAGATCCGC CCCGGCGAAG TGGTCATCCT GTTTTCCATG
CCGGTCAGCT ACCGGGACGC CTCGGCCCGC AGCGAAGCAC TGCTGCGCGG CTTCGAGGAC
CCTGATACCC ATATGGCTCT TCTGGACAGC AAGGGCGCAG TGATCCGTGC ATCCGGCAAT
TTCGACCGGC TCGGCATTAC GCCACGCACC ATTGAAACCA TCGTGCAGAT GGCGCAAGTC
CAGCCCGGCG GCCTGATGAA GCGGCCTATT CCGACAGCAC GCGGCAACCT GCCAGCTGCA
CTGGGCAGAA TTGCCGACGA CCCAGCAATG TTCCTGCTGT TTGCAGTGGA AACCCTGCTG
GGAACGCTGG ATGCGTCGGA TGGGTTTACT GAGGAGCAGC CCACCCCGGC TTCCGTAACC
GCTCCACAGG TCCACGAACC GCAGGTTTCA ACAGAGCCAG CGGTGGCCGC TGCTGAGCCT
CCCCCGTCTG AGACTTTTCC AGCCGCAGAT ACAATCGCTG TTGAGGTTGA AGAGGCCGAG
CACGAGGAAG CCAAGTCCGA GGAAACAACG CCCACAGAGA CTTTCGAGGA TGTGGTCGAA
GCCCTGGGCA GCATCCACGA GTTGGAACCT GAGCCGGAAG ACCTGTCCCA AGCGGATGCG
CTGAGCCCGC AGCCGGACGA TCATGCCATT GGCGAGCCCG CGCCTGAAGA CGAGCCCTTC
CCTGAAGACG AGGACTTGCC TGAAGAACTG TCCGTTCCCG AGGAAAGCCA TCCTGAAGCG
GAACAGCCTC CTGCCACGTC CGACGCGACA TTGACAGAGG ATCGTCAAGC CAGCGCGGAT
CTGCCAGATT CGGATCTAAA TGCCGGTGTC GAACAGGATG AGATCGAAGC CGAGGACGAT
ACCCACCTAG AGGAGCCCGC AGAACCGGAG GCGATCGCCG CCACAGCTGA CCCCGCTGAT
CAGTCTGAGG AGAGCCAAGC CGAGACCAGC ACATCCTCTT CGGACGCTTT TGAGCAGGAC
GAAGAGGGCG AGACGGACTA CGCGCCGCAT TCCGAGGAAG AAACGCCCGA ACGGCCGGAA
ACCGGTAGCG GACAGGCCGC ACGGCAACAG GAGAACACCG AGGAGGATTT CGCCTTCGCA
CCGACCATGC GGGCGGCACG GTTCGTCTGG AAGGTCGATG CACTCGGCTG TTTCAGCGAA
GTCTCGCCGG AATTTGGCAA GGCGGTCGGC CCGCGGTCGG CGGCCATCGA AGGCCAGACC
TTTGCCGATC TTGCTGCCCT GTTCAATCTC GATCCCGATG GCAAGATCGT CGAATTGCTG
AAAAAGCGCG ATACCTGGTC CGGCAAAACG ATCTACTGGC CGATTGAAGG CACCAGCTTG
AAAGTGCCGG TCGATCTGGC CGCCTTGCCG ACCTATACCC GCAATCGCGA TTTTGATGGC
TTCCGGGGCT TTGGCGTCGT TCGTCTGGCC GATTGCATCG AAGATACCGA CAAGGTGGGA
CTGACCTTAA GCACCCCTCT CAATCAGACC GGCACGACCG AGCAAGCGGC GCAAGCCGAT
CCTCAGGAAG ACATGCGTGA CGATGCCCCC GCTGCTCCGG CAGAGGTCGA AAAGGCTGAT
ACCATCCCTG CGCCAGAACG GGTGGAAGAA CAGGAGCCGG AACGGGAAGA GGTGCCGGCC
TTGGTCATCA GCGCTCCAGC CCCCCTTCCT CAGGCGGAAA ACATCGTTCA ACTCAAGCCT
CGCCATTTCG GCCGCGAAGG CTTGAGCCCC GCTGAACATG CGACCTTTCA GGAAATTGCC
CGCCGATTGG ACGCACTCGG TGCAAAATCC GCTGACGGCA GCCGCGATCT ATCGTCCAAA
AAGGGACATA CCGACACGGG ACGTGACGAC AAAGCCACTG TCGAAGACCA AAACCCATCC
CCTGTTGACG CAGCAAATGC CGAAACGCAG ACGCCGGATG CCAGCGCCGA CCATGCGACA
CCCGAAGCGA CGGATACAAC AGTGCCTTCG CCACGTGCCG AGCGCGACAG CCTGCCTGAG
AATGACAACA CAAAACCAGA TCCAGACACC GATCTATCGG CATCGCAGGC CAGTGAAAAG
GCCAATGCGG AGGTAAGCGA CGAGTCAACA AGCGCCGAAG ATGGCGACGA TCTGACTGAC
GTCGTTTCTG AACAGGAAGG GGACGAGCTG GATGAGACCG TCGTCGATTT CCCTGCTCCC
TCTGCTGGTG ATGAGGTTTC CGCCAATACA AACGATGACG CAGAGGATGG AAAAAACGCT
GCGGACGAGA TGATCCTGCC GGTCGCATCC GTGCCTGGCG CTCTACTGCC ACGTCCGCCG
CGCGATGTGG TGTTTTCGCC TGATGTGCTG GACATGCTGC CCGTGGCATT GCTCGCTCAT
CGCGGTGATA CCCTGATCCA TGCCAATCCG GAATTTCTGG CGCTGACCGG CTATGCCGAT
CTCGACGCAT TGGCTCAGTC CGGTGGGCTG GATGCGCTTT TACAGCGTGA CGACGTGGTG
CAAGGCGACA ATCCGCAAGA CGATCAGCCT GGAACGGGCG ACGCGCGCCG GGATGGCAGG
CTCGTCGTGG TCAGGGCCGA TGATGCGCTG GTGCCGGTCT CGGCGCGGCT GCAATCGATC
CGCTGGGAGG AGGCAAGCGC CTTGCTGCTG GCGCTGGTGC CGCAGGCTGC GACAAAGCCT
TCTGAGGCGG TCATTGCGGA CCATACGCCT CGTTCGGTTG CCGATGCGGG TGACAGCTCA
CAGCCTGGAT TGGACCATCC GACCCGGCTT GACGCGGTGG AACATACCGG CCTGCGCATC
GAGGTGGAGG AGCTGCGCTC CATCCTGGAA ACGGCAACCG ATGGCGTGGT GACTATCAGC
ACCGATGGCG AGATCCGCAC GGTGAACGGC GCGGCAAGTG CGCTGTTCAA CTATGACGAA
GACGATATTC GCGGTAAGCC CTTCGTGACG CTGTTTGCCC ATGAGAGCCA GCGGGCGATC
CTCGATTATC TGGGCGGGCT GACCGGTCAT GGCGTTGCCA GCGTGCTCAA CGACGGACGC
GAAGTGATCG GCCGGGAATC CTCCGGCGGT TTCATTCCGC TGTTCATGAC CATTGGTCGC
CTCTCCTCTT CCAACGGCTT TTGCGCTGTT ATCCGCGACA TTACCCAATG GAAGCGCACC
GAAGAGGAAT TGCGCAGCGC CAAACGCGCC GCCGAGACCG CCAATGCCCA TAAGACCGAT
TTCCTGGCAC GGGTCAGCCA TGAAATCCGC ACGCCGCTGA ATGCCATTAT CGGCTTTGCC
GATATCATGG CGGATGAGCG CTTCGGGCCG ATTGGCCATG GGCGCTACGC TGAATATGCC
GCCGATATCG GCCGTTCCGG CCGGCATGTG CTGGATATCG TCAACGATCT CCTGGATATT
TCCAAGATCG AGGCGGGCGA AATGGATCTC GACTTCATCG CGGTTGGCTT GAACGAGACG
GTGTCGGAAG CCGTCGCCAT CGTCCAGCCG CAGGCAAATG GCCAACGCGT GATCATCCGC
ACGGCGCTGT CGCAATCGGT GCCGAATGTC GTGGCCGACA TGCGGTCGAT CAAGCAGATC
GTGCTCAACA TCCTGTCGAA TGCCATCCGG TTCACGCCTT CAGGTGGGCA GATCATCGTT
TCCACCAATT ACGAGCCAAA TGGCAGCGTA ACCCTCCGCA TCCGCGATAC CGGGATCGGC
ATGACGCGGG CGGAACTGGA ACAGGCGATG AAGCCGTTCC GGCAAGTGTC TCCCGGCGGC
GCACGGCTGC GCGGCGACGG CACCGGTCTT GGATTGCCGC TGACCAAGGC CATGGTGGAT
GCCAATCGCG CCAGCTTTGC CATTCAATCG ACACCGAACG AGGGAACGCT GGTGGAAATC
ACCTTCCCAT CGCCAAGAGT TCTGGCGGGA TGA
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| Protein sequence | MPAIQYPFID IAVHSAVRAR FARGDALALF SLDLERVLWA NGAGAGFFGT ASVYDFLDQG
PPRQDVTFRQ IAAMARQLKT TGEARRLVVR AGSGFRLVPV EAQLERLEIR PGEVVILFSM
PVSYRDASAR SEALLRGFED PDTHMALLDS KGAVIRASGN FDRLGITPRT IETIVQMAQV
QPGGLMKRPI PTARGNLPAA LGRIADDPAM FLLFAVETLL GTLDASDGFT EEQPTPASVT
APQVHEPQVS TEPAVAAAEP PPSETFPAAD TIAVEVEEAE HEEAKSEETT PTETFEDVVE
ALGSIHELEP EPEDLSQADA LSPQPDDHAI GEPAPEDEPF PEDEDLPEEL SVPEESHPEA
EQPPATSDAT LTEDRQASAD LPDSDLNAGV EQDEIEAEDD THLEEPAEPE AIAATADPAD
QSEESQAETS TSSSDAFEQD EEGETDYAPH SEEETPERPE TGSGQAARQQ ENTEEDFAFA
PTMRAARFVW KVDALGCFSE VSPEFGKAVG PRSAAIEGQT FADLAALFNL DPDGKIVELL
KKRDTWSGKT IYWPIEGTSL KVPVDLAALP TYTRNRDFDG FRGFGVVRLA DCIEDTDKVG
LTLSTPLNQT GTTEQAAQAD PQEDMRDDAP AAPAEVEKAD TIPAPERVEE QEPEREEVPA
LVISAPAPLP QAENIVQLKP RHFGREGLSP AEHATFQEIA RRLDALGAKS ADGSRDLSSK
KGHTDTGRDD KATVEDQNPS PVDAANAETQ TPDASADHAT PEATDTTVPS PRAERDSLPE
NDNTKPDPDT DLSASQASEK ANAEVSDEST SAEDGDDLTD VVSEQEGDEL DETVVDFPAP
SAGDEVSANT NDDAEDGKNA ADEMILPVAS VPGALLPRPP RDVVFSPDVL DMLPVALLAH
RGDTLIHANP EFLALTGYAD LDALAQSGGL DALLQRDDVV QGDNPQDDQP GTGDARRDGR
LVVVRADDAL VPVSARLQSI RWEEASALLL ALVPQAATKP SEAVIADHTP RSVADAGDSS
QPGLDHPTRL DAVEHTGLRI EVEELRSILE TATDGVVTIS TDGEIRTVNG AASALFNYDE
DDIRGKPFVT LFAHESQRAI LDYLGGLTGH GVASVLNDGR EVIGRESSGG FIPLFMTIGR
LSSSNGFCAV IRDITQWKRT EEELRSAKRA AETANAHKTD FLARVSHEIR TPLNAIIGFA
DIMADERFGP IGHGRYAEYA ADIGRSGRHV LDIVNDLLDI SKIEAGEMDL DFIAVGLNET
VSEAVAIVQP QANGQRVIIR TALSQSVPNV VADMRSIKQI VLNILSNAIR FTPSGGQIIV
STNYEPNGSV TLRIRDTGIG MTRAELEQAM KPFRQVSPGG ARLRGDGTGL GLPLTKAMVD
ANRASFAIQS TPNEGTLVEI TFPSPRVLAG
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