Gene Avi_0816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0816 
SymbolaceA 
ID7386302 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp699018 
End bp700307 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content60% 
IMG OID643650373 
Productisocitrate lyase 
Protein accessionYP_002548583 
Protein GI222147626 
COG category[C] Energy production and conversion 
COG ID[COG2224] Isocitrate lyase 
TIGRFAM ID[TIGR01346] isocitrate lyase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.745785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGATT TTTACAAACT CGTTCCCTCC GCGCCACAAG GCCGTTTCGA TGGCGTTGAG 
CGGACCTATT CGGCAGAGGA TGTCAAGCGG CTGCGTGGCT CCGTGGATAT CCGCTATTCG
CTGGCAGAAA TGGGGGCGAA CCGGTTGTGG CAGCTGATCG GCCAGGAGGA TTTCGTCAAT
GCGCTGGGGG CGCTATCGGG CAATCAGGCC ATGCAGATGG TGCGCGCCGG GTTGAAGGCG
ATCTACCTTT CCGGCTGGCA GGTTGCCGCG GACGCCAATA CCGCGTCCTC CATGTATCCC
GACCAATCGC TCTACCCTGC CAATGCGGCC CCGGAACTGG CCAAGCGGAT CAACAAGACC
CTGCAACGGG CCGACCAGAT CGAAACCCAG GAAGGCAAGG GCCTGTCGGT CGAGACGTGG
TTTGCACCGA TTGTTGCCGA TGCGGAAGCT GGTTTTGGCG GGCCGCTCAA TGCTTTCGAG
ATCATGAAAG CCTTCATTGA GGCGGGTGCG GCGGGCGTCC ATTACGAAGA CCAGTTGGCG
TCGGAGAAGA AATGCGGCCA TCTGGGCGGC AAGGTGTTGA TCCCGACCGC CGCCCATATC
CGCAACCTGA CCGCCGCCCG GCTTGCCGCC GACGTGATGG GCACGCCAAC GCTGATCATC
GCCCGCACCG ATGCCGAGGC CGCCAAGCTG CTGACCTCTG ATATCGATGA GCGCGACCAG
CCTTTTGTGG ACTATGATGC GGGTCGCACT GCCGAAGGCT TTTACCAGGT ACGAAACGGC
ATCGAGCCCT GCATTGCCCG CGCCATTTCC TATGCGCCTT ATTGCGATCT GATCTGGATG
GAGACCTCCA AGCCGGATCT GGAACAGGCC CGCAAATTCG CGGAGGCCGT GCATAAGGTG
CATCCGGGCA AGAAGCTGGC CTATAATTGC TCGCCATCCT TTAACTGGAA AAAGAACCTC
GATGACGCGA CCATTGCCAA GTACCAGAAG GAACTGGGCG CCATGGGCTA CAAGTTCCAG
TTCATCACGC TGGCGGGCTT CCATCAGCTG AACTACGGCA TGTTTGAACT GGCGCGTGGC
TACAAGGACC GGCAGATGTC CGCCTATTCC GAGCTGCAAC AGGCGGAATT TGCCGCAGAA
GCCAATGGCT ACACCGCCAC CAAGCATCAG CGCGAAGTTG GCACCGGCTA TTTCGATGCG
GTTTCCATGG CGATTTCCGG TGGCACGTCC TCAACCACGG CCATGAAGGA GTCGACCGAA
CATGACCAGT TCCGCCCTGC TGCTGAATGA
 
Protein sequence
MTDFYKLVPS APQGRFDGVE RTYSAEDVKR LRGSVDIRYS LAEMGANRLW QLIGQEDFVN 
ALGALSGNQA MQMVRAGLKA IYLSGWQVAA DANTASSMYP DQSLYPANAA PELAKRINKT
LQRADQIETQ EGKGLSVETW FAPIVADAEA GFGGPLNAFE IMKAFIEAGA AGVHYEDQLA
SEKKCGHLGG KVLIPTAAHI RNLTAARLAA DVMGTPTLII ARTDAEAAKL LTSDIDERDQ
PFVDYDAGRT AEGFYQVRNG IEPCIARAIS YAPYCDLIWM ETSKPDLEQA RKFAEAVHKV
HPGKKLAYNC SPSFNWKKNL DDATIAKYQK ELGAMGYKFQ FITLAGFHQL NYGMFELARG
YKDRQMSAYS ELQQAEFAAE ANGYTATKHQ REVGTGYFDA VSMAISGGTS STTAMKESTE
HDQFRPAAE