Gene Avi_0796 details

Gene Information

• Locus tag: Avi_0796
• Symbol: edd
• ID: 7386290
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 681257
• End bp: 683074
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650361
• Product: phosphogluconate dehydratase
• Protein accession: YP_002548571
• Protein GI: 222147614
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGCCG ATCACCGTAT CGAAACCATC ACCAAGCGCA TTGTCGAGCG CTCCAAGCCA 
ACCCGCGAGG CCTATCTGGA TCGCGTTCGC CGGGCCGCTG GCAAGGGCGT GAACCGTGGC 
TCTTTGGCCT GCGGCAATCT TGCCCATGGC TTTGCGGTCT GTTCCCCCGG GGACAAGGCC 
GCACTTGCTG GCGACACCGT CCCCAATCTC GGCATCATCA CCGCCTACAA CGATATGCTT 
TCGGCGCATC AGCCGTTTGA AACCTATCCG GCGCTGATCC GCCAGGCAGC CAGCGAAGTG 
GGCGGCGTCG CACAGGTGGC AGGCGGCGTG CCCGCCATGT GCGATGGCGT CACGCAGGGC 
CAGCCCGGTA TGGAGCTTTC GCTGTTTTCC CGCGATGTGA TCGCCATGGC GGCCGGCATC 
GGTCTCAGCC ACAACATGTT CGATGCGGCG GTGTTTCTCG GCGTCTGCGA CAAGATCGTC 
CCCGGCCTGA TGATTGCTGC GTTGACATTC GGTCATCTCC CTTCCGTGTT TATTCCGGCT 
GGGCCGATGA CCACGGGCTT GCCGAATGAC GAAAAGACCC GCATTCGCCA GCTCTATGCC 
GAGGGCAAGG TAGGCCGGGC CGAACTGCTG GAAGCCGAGT CCAAATCCTA TCACGGCCCC 
GGCACCTGCA CGTTCTACGG CACGGCCAAT TCCAATCAGA TGCTGATGGA AATCATGGGC 
TTTCACATGC CCGGCGCCTC CTTCATCAAT CCCGGCACGC CGCTGCGCGA TGCGCTGACC 
CGCGAAGCCA CCAAGCGGGC GCTGGCGATT ACCGCGCTTG GCAATGACTA TACGCCGTCA 
GGCGAGATGA TCGACGAGCG CTCCATCGTC AATGGCGTGG TCGGCCTGCA TGCCACGGGC 
GGCTCCACCA ATCACACCAT GCACCTGATC GCCATGGCAC GGGCGGCAGG CATTCTGCTC 
AGCTGGCAGG ATATTTCCGA CCTCTCCGAC ATCATTCCGC TTCTCGCCCG CGTCTATCCG 
AACGGCTCTG CGGATGTGAA CCATTTTCAC GCCGCCGGTG GCATGGGCTT TCTGATCAAG 
CAATTGCTGC GCGCCGGTTT TGTGCATGAC GATGTGCGCA CCGTCTATGG CCAGGGGCTT 
GCCGCCTATA CGATCGAGCC ACATCTGAAC GCCGACGGCA CCGTAGACCG CCAGCCCTCG 
CCCGAAGACA GCGCCGATCC GAAAGTGTTG TCGCGGATCG AAGCGCCGTT CCAGGCGAAT 
GGCGGCTTGA AAATGCTGAC TGGCAATATG GGCAAGGCCG TGATCAAGAT CTCCGCCGTC 
AAGCCGGAAC GCCACATTGT CGAGGCGCCT GCCATGGTGT TCCACAGCCA GCAGGACATG 
CAGGATGCCT TCAAGGCCGG CAAGATGAAC CGCGACTTCA TTGCCGTGGT GCGCTTTCAA 
GGCCCAAAAG CCAATGGCAT GCCGGAACTG CACAAATTGA CCCCGTCACT TGGCGTGCTT 
CAGGACCGTG GCCTCAAGGT GGCGCTGGTG ACGGATGGAC GCATGTCCGG TGCCTCTGGC 
AAGGTGCCTG CTGCCATCCA CGTCACACCG GAAGCCGTCG ACGGCGGACC AATTGCCAAG 
ATCCGCGATG GCGACATGAT CCGTCTCGAT GCCGTGGCTG GAACGCTGGA AGTGCTTGTC 
AATGCCGCGG AATTTGCAAG CCGCAGCCCT GAAGTCATCG ACTTGGCGGA TAATGACTTC 
GGCATGGGAC GTGAACTGTT TGCCCCGCTG CGCCGCATTG CAGGCCCGGC AGACCAGGGT 
GCCAGCGTGC TGTTCTAG 

 

Protein sequence

MSADHRIETI TKRIVERSKP TREAYLDRVR RAAGKGVNRG SLACGNLAHG FAVCSPGDKA 
ALAGDTVPNL GIITAYNDML SAHQPFETYP ALIRQAASEV GGVAQVAGGV PAMCDGVTQG 
QPGMELSLFS RDVIAMAAGI GLSHNMFDAA VFLGVCDKIV PGLMIAALTF GHLPSVFIPA 
GPMTTGLPND EKTRIRQLYA EGKVGRAELL EAESKSYHGP GTCTFYGTAN SNQMLMEIMG 
FHMPGASFIN PGTPLRDALT REATKRALAI TALGNDYTPS GEMIDERSIV NGVVGLHATG 
GSTNHTMHLI AMARAAGILL SWQDISDLSD IIPLLARVYP NGSADVNHFH AAGGMGFLIK 
QLLRAGFVHD DVRTVYGQGL AAYTIEPHLN ADGTVDRQPS PEDSADPKVL SRIEAPFQAN 
GGLKMLTGNM GKAVIKISAV KPERHIVEAP AMVFHSQQDM QDAFKAGKMN RDFIAVVRFQ 
GPKANGMPEL HKLTPSLGVL QDRGLKVALV TDGRMSGASG KVPAAIHVTP EAVDGGPIAK 
IRDGDMIRLD AVAGTLEVLV NAAEFASRSP EVIDLADNDF GMGRELFAPL RRIAGPADQG 
ASVLF