Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0683 |
Symbol | istA |
ID | 7388715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 587844 |
End bp | 589361 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643650280 |
Product | IS21 family transposase |
Protein accession | YP_002548490 |
Protein GI | 222147533 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4584] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACTTT TAAACATCAT CCGTCGGATG GCGCTGCGTG AGAAGCAGTC GATCCGCGAG ATCAGCCGGC GTACTGGGCT GTCACGTAAC ACGATCGCAA AGTATTTGAA CGCTGGCACG ATCGAGCCGA CGTTTACGGT ACCGGAGCGA CCGAGCAAGC TTGATCCTTT CGCCGACAAA CTTTCTGGCT GGCTGAAGAC CGAGGCAGGG CGGTCGCGCA AGCAGCGCCG AACGCTGAAG CAGCTTCATG CCGATCTTGT GGCTCTCGGC TTTACCGGCT CTTATGGCCG GGTCGCCGCG TTCGCCCGTG AGTGGCAGGC TGAGCAGCAG ACGGCGGGCC GCGGCATATT CGTACCGTTA TCATTCCGCC CAGGTGAAGC ATTCCAATTC GATTGGAGTG AAGATTATGC CGTGATCGCT GGCGAGCGTG TGAAGCTTCA GGTCGCACAT ATCAAGCTAT CGCACAGTCG GGCCTTTCTG GTCAGGGCTT ACCTGCTGCA AACGCACGAG ATGCTCTTCG ATGCTCACTG GCACGGCTTC CGGGTCTTCG GCGGTGTGCC TGCGCGAGGG ATTTATGACA ATATGCGCAC AGCCGTTGAT CGGGTCGGCC GTGGCAAGGA GCGGCAGGTC AATATCCGTT TCCTGGCGAT GACGAACCAC TACGTCTTTG CGCCCGAATT CTGCAATCCA GCGGCCGGTT GGGAAAAGGG TCAGGTCGAG AAGAACGTCC AGGATGCCCG ACCACGCTTG TGGCAACAGA TGCCAGACTT TCCAAATCTG ATGGCGTTGA ATGACTGGCT GGAGCAACAT TGCCAGGAGC TGTGGCGGGA GACGCTGCAT GGCACCTTGT CAGGCACGAT CGCGGATGTT TGGGCCGATG AGCGGGCAGC ATTGATGGCG CTCCCTGCCA TGTTTGACGG CTTCGTCGAG CAGAGCAAGC GCGTCTCACC AACATGCCTG ATCACCTTCG AGCGTAATCG TTACAGCGTG CCAGCATCAT TTGCGAACCG GCCCGTCAGC CTGCGGATAT ACCCAGACCG ACTGGTTGTT GCGGCCGAGG GAAACATTCT GTGTGAACAC GCGCGGATTA TTGAGCGCAG CCACAAGCTA CCGCGAACGA TCTACGACTG GCGGCATTAC CTTGCCGTCA TCCAACGCAA GCCCGGAGCC CTACGCAATG GCGCACCGTT TTTAGAATTA CCGTCTGCCT TTCGACAACT ACAGGAGCAG ATGCTTCGTC GTCCTGGCGG TGATCGTGAG ATGGCCGATA TCCTTGCCCT TGTCCTTCAT CACGACGAAC AGGCCGTACT CCGTGCTGTG GAGTTGGCTC TGGATGCGGG CGTGGCGACC AAGACGCATG TAATGAACCT GCTGCATCGG TTGATTGACG GCAAGACCAC CGATGGTCCC GATATCGACA CGCCACAGGC GCTAACCTTG TTGCGTGAAC CCAAGGCCAA TGTCGAACGC TATGACGGTT TACGTGTCCG CATCGTGGGA GGTCGCCATG CGTCATGA
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Protein sequence | MGLLNIIRRM ALREKQSIRE ISRRTGLSRN TIAKYLNAGT IEPTFTVPER PSKLDPFADK LSGWLKTEAG RSRKQRRTLK QLHADLVALG FTGSYGRVAA FAREWQAEQQ TAGRGIFVPL SFRPGEAFQF DWSEDYAVIA GERVKLQVAH IKLSHSRAFL VRAYLLQTHE MLFDAHWHGF RVFGGVPARG IYDNMRTAVD RVGRGKERQV NIRFLAMTNH YVFAPEFCNP AAGWEKGQVE KNVQDARPRL WQQMPDFPNL MALNDWLEQH CQELWRETLH GTLSGTIADV WADERAALMA LPAMFDGFVE QSKRVSPTCL ITFERNRYSV PASFANRPVS LRIYPDRLVV AAEGNILCEH ARIIERSHKL PRTIYDWRHY LAVIQRKPGA LRNGAPFLEL PSAFRQLQEQ MLRRPGGDRE MADILALVLH HDEQAVLRAV ELALDAGVAT KTHVMNLLHR LIDGKTTDGP DIDTPQALTL LREPKANVER YDGLRVRIVG GRHAS
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