| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0680 |
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| Symbol | |
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| ID | 7388713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 581996 |
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| End bp | 583660 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650278 |
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| Product | agrobacteirum virulence protein VirD4 |
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| Protein accession | YP_002548488 |
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| Protein GI | 222147531 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAGG CAAAGCTGGC ATGGGCCGCT TTCAAGACCA TGATACGCAT GGCCGCCGAT
GATCCTGTCT GGGCAATGAC AGCGCTGGCA TTGGCACCGT TTCGTGCCAT CAGGCCAATA
GGGCAGGCGA TCGTGCTGTT AGTGCTCGTC ACCCTCATCA TCGGCATTGG CGGATCACGG
TTGCTGGAGG CAATCGGCTA CGGCAAAGGC AGCATTCCAA TGATGATGAT GAGTGTTGTT
TTTCCCATCC TGCTCATCGC GATGGTGTTT CGCCTCATCA CCAATCCAAT GATCCACCAT
TTTGGAAACA GAAATGGCGA TACGCATGGT TCGGCTCGCT TTGCCACAAA CAGTGAGACA
GCACCCCTCA CCCGCAATGA CAGCGGCCTG CTGATTGGCC GCAACAGTAA GACTGGGACA
TTACTCCGAT ATGATGGTCC GGCCCATCTG CTGACGATGG CACCCACCAG AACCGGCAAG
GGCGTTGGCA CCATCATTCC AAACCTATTG ACCGCCAATC GGTCCGTCAT CTGCATTGAT
CCCAAAGGGG AGAATGTCCG GATCGCTAGT CGGGCCCGCG AAGCCTTCGG GCCGGTCTAT
GTTCTCGATC CCTTTGGCAT CACGGAGATG CGCTCAGCCG CCTTCAATCC CCTTGATGGT
CTCAACTCCG ATAGTCTCGA CGTCGCGGAG GACGCCAGTA CCCTTGCCGA TGCCCTCGTC
TTTGATGAGC CGGGCATGGC AGGCGAAGCC CATTGGAACG AGGAAGCCAA GGCATTGATC
GCTGGCTTGA TCCTCAGGGT TATCACCCAT GAGAGGGTTG AGCGCCGCAA CCTCGCAACG
CTGCGCGAAT ATCTGACACT CTCGCCCGAG GCCTTCGCTG CACTTCTCAA ACGAATGCAA
GACACGGACG ATGTGAATGG CCTGATTGCG CGTGCCGCCA ATCGCCACCT TGGCAAATCA
GACCGCGAGG CCGCTGGCGT GCTATCATCC GCCCAGCGCC ATACCCATTT CCTCGACAGT
CCCAGAATGC AGCGCGTTCT CGACGAGAGC TATTTCTCCT TTGCCGATCT CAAGCGCAAA
ACCATGACGA TCTTCCTCGT CCTGCCGCCG GATCGGTTGT CCAGCTATTC GAGATGGCTG
CGCCTGCTCA TCACCCAAAG CCTGCTCGAC ATGGCCCGCA CATCTGAGAA ACCCGCATCC
CCTATTCTCT ACCTCCTTGA TGAGTTCGCA GCCCTTGGTC ATCTGGCCCC AGTAGAGCGC
GCCATGGGCC TGATGGCAGG TTACGGCGTT CAACTCTGGC CGATCCTGCA AGACGTTCAC
CAACTCCGCG CCACCTATGG TCAACGCGCT GGAACATTCC TCTCAAACGC AGGCGTTCTT
CAGGTGTTCG GGGTCAATGA TCATGACAGC GCCCGTCTCA TCTCTGATCT GCTTGGACAA
GAAACCGTGG TGTTTCAGAC CATGGCGCGC GCACTCGATT CCGAGAAATC CGGGATCTCC
TATAGTGAAC AACACACGGC CCGCCCTCTG CTCACGCCGG ACGAAGTTCG CAACCTGCCA
GAACAGATTG AATTGCTGTT TCTCGCAGGC CAGCGCCCGA TCTTGGCCAA AAAGCTCGCC
TATTATGCCG ATCCCGAGTT CACAGGAGCC TTTGATCCCG CATGA
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| Protein sequence | MKQAKLAWAA FKTMIRMAAD DPVWAMTALA LAPFRAIRPI GQAIVLLVLV TLIIGIGGSR
LLEAIGYGKG SIPMMMMSVV FPILLIAMVF RLITNPMIHH FGNRNGDTHG SARFATNSET
APLTRNDSGL LIGRNSKTGT LLRYDGPAHL LTMAPTRTGK GVGTIIPNLL TANRSVICID
PKGENVRIAS RAREAFGPVY VLDPFGITEM RSAAFNPLDG LNSDSLDVAE DASTLADALV
FDEPGMAGEA HWNEEAKALI AGLILRVITH ERVERRNLAT LREYLTLSPE AFAALLKRMQ
DTDDVNGLIA RAANRHLGKS DREAAGVLSS AQRHTHFLDS PRMQRVLDES YFSFADLKRK
TMTIFLVLPP DRLSSYSRWL RLLITQSLLD MARTSEKPAS PILYLLDEFA ALGHLAPVER
AMGLMAGYGV QLWPILQDVH QLRATYGQRA GTFLSNAGVL QVFGVNDHDS ARLISDLLGQ
ETVVFQTMAR ALDSEKSGIS YSEQHTARPL LTPDEVRNLP EQIELLFLAG QRPILAKKLA
YYADPEFTGA FDPA
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