Gene Avi_0628 details

Gene Information

• Locus tag: Avi_0628
• Symbol: rfbC
• ID: 7388678
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 546156
• End bp: 546719
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650240
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_002548452
• Protein GI: 222147495
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCAAC GTTTCCAGCC CGAAGACACC GCGATTCCCG GCCTGACGCT GCTGACCCGC 
AGCCGGTTTG GCGACGAGCG TGGTTTTCTC AGTCGGTTGT TTTGCGGTGA AGAACTTGCA 
GCTTTTGGCT GGCCGGGGCC GGTCTTGCAG GTCAACGAAA CCGGCACGGT GCAAAAAGGC 
ACCGTGCGCG GCCTGCATTT TCAGCACGCC CCTTTTGGCG AGTGGAAACT GGTGACCTGC 
GTCGAAGGCA CAATCCTCGA CGTGGCCTTG GATCTGCGCA AGGGCTCGTC GAGCTTTCTC 
CAGCATGTCT GTGTCGAGCT GTCGGGCGAC AATTGCCGCT CGCTGCTGAT CCCGCCGGGT 
TTTGCCCATG GCTTTCAGGC ACTGAGCGAC ACCGTGCGGA TGATTTATAC CCATTCCGCG 
CCTTACCGTG CTGAGGCTGA AGGCGGGCTT CACCCGCAGG ATGCAAGGAT CGGCATCACC 
TGGCCTTTGC CGGTTGAGCG GCTGTCAGCC CGAGACCAGA GCCATCCGCT GATCCAGCCC 
GATTTTGAAG GACTGATTGC ATGA 

 

Protein sequence

MSQRFQPEDT AIPGLTLLTR SRFGDERGFL SRLFCGEELA AFGWPGPVLQ VNETGTVQKG 
TVRGLHFQHA PFGEWKLVTC VEGTILDVAL DLRKGSSSFL QHVCVELSGD NCRSLLIPPG 
FAHGFQALSD TVRMIYTHSA PYRAEAEGGL HPQDARIGIT WPLPVERLSA RDQSHPLIQP 
DFEGLIA