Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0620 |
Symbol | |
ID | 7388673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 538015 |
End bp | 541524 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643650235 |
Product | two component sensor kinase/response regulator hybrid |
Protein accession | YP_002548447 |
Protein GI | 222147490 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTTCCGG CATGGCTGAT CATCACGGCA TCGATTGCCT ATCTGCTGCT GCTGTTTGCG GTGGCAAGCT ATGGCGACAG GCGAAGCCGC CGCAATGGCG TGCCCGCCGG TGGGCGTCCG CTTGTCTATG GGCTGTCGCT GGCGGTCTAT TGCACCTCAT GGACCTATTT CGGCGGCGTC GGCCTGGCTG CGGACCGCGG CCTCGAATTC ATGGGCATCT ATATCGGCCC GATCCTGATG CTGACATTGG GCCTGCCGCT GATCCGCCGG ATGATCGAGA TCGCCAAGGT CGAAAAGCTG ACCTCCGGCG CTGATTTCGT TGCTGCCCGC TATGGCAAGA ACCCAATTGT CGGCATGCTG GTAACGGTGA TTTCGCTGGC AGGCTCCATT CCCTATATCG CTCTTCAACT GAAGGCCGTC TCCAATTCGG TCAGCGTCAT GGTCGATCCG GCCAGCTATG GCATCGGCAC CGGCAATCTC TATTTCGTCG ATCTGGCGCT GATCGTTGCC CTGACGCTTG CCTGTTTTTC CGCGATTTTC GGCACGCGCC ATACGGACGC CACTGAGCAT CAGGATGGGT TGATCCTGGC GATCTCGATG GAATCGGTGG TCAAGCTGCT GGCCTTTTGC ACGCTGGGCA TCACGGTGGT GTTCTTCTTG TTCGATGGAC CGGCGGATCT CTGGCGCGCG GCCACCGAAA GCCCGAGGGT GATGGAGGCG CTGGCCTATG AGACACCCCT TAGCCGCTGG CTGCTGTTGA TTGCGCTTTC GGCCTTCGCC ATATTGATGC TGCCGCGCCA GTTCCATGTC AGCGTGGTCG AAAACCGCAC GGATCGGGAA CTGCGCCGGG CCGGACTGCT GCTGCCGCTT TATCTGATCG CCATCAATCT CTTCGTGCTG CCAGCTGCCA TTGGCGGGCT TCTGGCTTTC AAAGGCACCG GCAATGCCGA TCTCTATGTG CTTTCCCTGC CGCTGACCCA TGATCTGCCA TTTGTCACGC TGGTCACCTT CATCGGCGGT TTTTCCGCCG CCACTGCCAT GGTGATCGTC GAAACGGTGG CGCTGGCCAT CATGATTTCC AACGACATCG TCCTGCCGGT TCTGCTGCGA CGCGGGTTCC GGCATGGGCC TGAGGCCTCA CAAAGTCTGG CCAAGACCGT GCTTCTCATT CGCCGCCTGG CGATTTTCGG GGTGTTGCTG CTCGGCTATG CCTATTTCCG GCTGGCCAGC GATGACAGGG GCCTTGCCTC CATCGGTCTG CTGGCCTTTG CCGCCATTGC CCAGATTGCC CCTTGCCTAC TGGGCGGGCT TATCTGGCGC AGGGCCAATG CGCGGGGCGC AATCCTTGGC CTGTCGCTTG GCTTTCTCAC CTGGATCTAT ACGCTGCTTT TGCCGAGCTT CGGGCTTGAT GCCCATAAGG ATCTGGCCCC GGATATCCTG TCCTTCCTGT TTCCGGGTGT TGATGCCTTC AGCCGGGCCG GGGCCGATCC GCTGCTGACG GCGACCGTAC TGTCCCTGCT GATCAACCTA TTGGCCTTTG TGCTTGGCAG CCTCAGCCGC AACCCACGCC CGGTCGAGCG CATCCAGTCG GGCATATTCG TGCGTCGGCA CCAACGTTCG CAATTTGCCA CCAGGGGCTG GAAAACCCGG GTCAGCATCG GCGACCTGAA GACAGCGATT GCCCGTTATC TCGGCCAGGA ACGGATGGAA CGCTCACTGA AAAGCTATGA GCGCGATGCC GGACGCCGGT TGGAAGACGA TAGTCCCGCC GACATGGCTT TCATCCATTT CACCGAGCAA TTGCTGGGTA GCGCCATCGG CTCGGCCTCG GCCCGGCTGG TCCTGTCGCT GGTGCTGCAA AAGGCCGAGG ATACGTCCGC CGACACCGCC TGGCTGCTCG ATCAAGCAAG CGAGGCTCTG CACTATAACC AGGATATGCT GCAAACCGCG CTTTCGCAGA TGGATCAAGG CATTGCGGTC TTCGACAGCA GTAGCCGATT GACGATCTGG AACCGGCGGT TTCGAAGCCT TCTCGATCTG CCCGACGAAA TGGGTCAGGT CGGCGTGCCA CTCAGCACGA TAGTCCATCG GCTGACCGAG CGCGGCGCCA TTGCGGCCAA GGAGGAAGCG GGCGTTCTTG CCAATTTCCA CCATCTCGAT GAACCCTTCC AGCTGGTGTT GAGCGAGGGT GCCCAGATCA TCGAAGTGCG CTGCAACGCC CTGCCCGACA AGGGGTTGGT GGCAACCTTC ACCGACATTA CCCCGCAGGT GGCAGCGGAC CGGGCTTTGA AACAGGCCAA TGAAACGCTG GAACAGCGGG TGGGCGAGCG CACGGCAGAA CTGATGCGGG TCAATACAGC ACTTGCAGAG GCTCGCGCCA GTGCAGACGA GGCCAATATC GGCAAGACCC GGTTCTTTGC CGCCGCCGGT CACGACATTC TCCAGCCGCT CAATGCCGCA AGGCTCTATT CCTCGGCGCT GGTGGAGCGG TTGGGCCAGT CGGAAAATGC CGGACTGGTC CGCAATATCG ATTCGGCACT GGAATCGGTC GAACAGATTC TTGGCGCGGT GCTGGACCTG TCCCGCTTGG ATACAGGCGC AATGAAGCCG CGTTTTGCCA CCGTCCCCCT GCAAGGCCTG CTGGAGCGGA TCAGGACCGA TTTCGAGCCG ATGGCGCTGG AGAAAAACCT GAAACTGGTG GTGCTGCCGA CCACGCTCAG CGTCCGCTCC GATGCCAACC TTCTGCGTCG GCTGGTGCAG AATCTGGTCT CCAACGCCAT CAAATATACA CCCTCCGGCA AGGTCCTGGT TGGTGCGCGC CGCCGTGGCG GCCAGGTGAT CATTCAGGTG ACGGATTCGG GCATCGGCAT TCCGACATCG AAATTCCGCA CTGTGTTCAA GGAATTTGCC CGGCTGGATG AAGGCATCAA AACCGCCAGC GGGCTTGGGC TGGGCCTGTC GATTGTCGAT CGTATCGCCC GGGTCCTCAA AGCGACGGTA GCGCTGGAAT CCCGGCCGGG CCGAGGCACC AGCTTTCGCG TCACCATGCC GTTCGAAAAG AGCGCCAAGG CGCCGTTGCC CGTTGAGGAT TTGGCGACCG CGACCGCGCT GCGGAGCAGT CTTAACGGCC TGCGCATCCT GTGCATCGAC AATGAGCCGG ATATTCTGGA AGGCATGCGG CTGCTGATCA GCGGCTGGGG CTGTGCGGTG ATGACCGCAG GCTCGGTCAC CGATCTCGAC ACGACCTTCA GCGACAATCC CGTGGCACCG GACGTTATCA TCGCCGATTA TCATCTGGGA GATGGCAGCG GCATCGGCGC GATTCTGCGC CTACGCGCGC TCTACGGTCA GCCGGTACCC GGCCTGCTGA TCACCGCTGA CCGCACCGCC GACGTGCGGG CGGAGGCTGA ACGGCAGGGC ATTGCCGTAC AGCATAAGCC CGTCCGTCCA GCGGCTTTGC GGGCCTATAT TACCCAGGTC TCCAGCCCGC GCCGCAGCGC TGCGGAATAG
|
Protein sequence | MLPAWLIITA SIAYLLLLFA VASYGDRRSR RNGVPAGGRP LVYGLSLAVY CTSWTYFGGV GLAADRGLEF MGIYIGPILM LTLGLPLIRR MIEIAKVEKL TSGADFVAAR YGKNPIVGML VTVISLAGSI PYIALQLKAV SNSVSVMVDP ASYGIGTGNL YFVDLALIVA LTLACFSAIF GTRHTDATEH QDGLILAISM ESVVKLLAFC TLGITVVFFL FDGPADLWRA ATESPRVMEA LAYETPLSRW LLLIALSAFA ILMLPRQFHV SVVENRTDRE LRRAGLLLPL YLIAINLFVL PAAIGGLLAF KGTGNADLYV LSLPLTHDLP FVTLVTFIGG FSAATAMVIV ETVALAIMIS NDIVLPVLLR RGFRHGPEAS QSLAKTVLLI RRLAIFGVLL LGYAYFRLAS DDRGLASIGL LAFAAIAQIA PCLLGGLIWR RANARGAILG LSLGFLTWIY TLLLPSFGLD AHKDLAPDIL SFLFPGVDAF SRAGADPLLT ATVLSLLINL LAFVLGSLSR NPRPVERIQS GIFVRRHQRS QFATRGWKTR VSIGDLKTAI ARYLGQERME RSLKSYERDA GRRLEDDSPA DMAFIHFTEQ LLGSAIGSAS ARLVLSLVLQ KAEDTSADTA WLLDQASEAL HYNQDMLQTA LSQMDQGIAV FDSSSRLTIW NRRFRSLLDL PDEMGQVGVP LSTIVHRLTE RGAIAAKEEA GVLANFHHLD EPFQLVLSEG AQIIEVRCNA LPDKGLVATF TDITPQVAAD RALKQANETL EQRVGERTAE LMRVNTALAE ARASADEANI GKTRFFAAAG HDILQPLNAA RLYSSALVER LGQSENAGLV RNIDSALESV EQILGAVLDL SRLDTGAMKP RFATVPLQGL LERIRTDFEP MALEKNLKLV VLPTTLSVRS DANLLRRLVQ NLVSNAIKYT PSGKVLVGAR RRGGQVIIQV TDSGIGIPTS KFRTVFKEFA RLDEGIKTAS GLGLGLSIVD RIARVLKATV ALESRPGRGT SFRVTMPFEK SAKAPLPVED LATATALRSS LNGLRILCID NEPDILEGMR LLISGWGCAV MTAGSVTDLD TTFSDNPVAP DVIIADYHLG DGSGIGAILR LRALYGQPVP GLLITADRTA DVRAEAERQG IAVQHKPVRP AALRAYITQV SSPRRSAAE
|
| |