| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0619 |
|---|
| Symbol | bapA |
|---|
| ID | 7388258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 537213 |
|---|
| End bp | 537695 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650234 |
|---|
| Product | autotransporter protein |
|---|
| Protein accession | YP_002548446 |
|---|
| Protein GI | 222147489 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.757907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCATTG CACCCGTGCC TCCCTTGAGA CGAAAGGACA TTACCATGAC GCAAGCGAAA
AACGGCGATA CCGTACGCAT CCACTACACC GGCCTGCTGC CGGATGGCAC GCAATTCGAT
ACCTCGCGCG ACCGCGATCC GCTCCAGTTC GAAATCGGCT CTGGCCAGAT CATTTCGGGG
CTTGAACGAC AGGTGGATGG CATGGAAGTC GGGCGAAGCC AGCGGGTGAC GGTGCCTGCG
GAAGAAGCCT ATGGCGCGCA TGATCCGCAG AAAATTCAGC AGGTGGCGCG CGACCTGATC
CCCGCCAATG TCAATGTGGC GCCCGGCACA AGGCTTCAAG CCCAGAGTGG CAATGGTACA
CCTCTGATTG TCACCGTGAC CGATGTGGCT GGCGATGTAG TGACAATCGA TGCCAACCAC
CCACTGGCCG GGCAGGATCT GATTTTCGAG GTCGAATTAA TCGATATCGT TCGCGCTGCC
TAA
|
|---|
| Protein sequence | MPIAPVPPLR RKDITMTQAK NGDTVRIHYT GLLPDGTQFD TSRDRDPLQF EIGSGQIISG
LERQVDGMEV GRSQRVTVPA EEAYGAHDPQ KIQQVARDLI PANVNVAPGT RLQAQSGNGT
PLIVTVTDVA GDVVTIDANH PLAGQDLIFE VELIDIVRAA
|
|---|
| |