| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0615 |
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| Symbol | lhr |
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| ID | 7389002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 531452 |
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| End bp | 533959 |
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| Gene Length | 2508 bp |
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| Protein Length | 835 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650230 |
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| Product | large atp-dependant helicase-related protein |
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| Protein accession | YP_002548442 |
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| Protein GI | 222147485 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGAGC CGGAATCCAC GCTTTCCATA TTGCCTCCCC CCTTCGAGCG TTGGTTTGCG
CAGAAGGGAT GGCAGCCGCG TGCGCATCAG TTGGAGCTGC TGGCGCGGGC CGGGCAGGGG
GAAAGCACGC TTCTGATTGC CCCGACCGGG GCTGGCAAGA CCCTTGCCGG GTTTCTGCCC
TCGCTGGTCG ATCTGACCCG GCGCGGGCGA AAGCGACCGG GTGAGGCTTT TACCGGCATT
CATACGCTTT ACATCTCGCC GTTGAAGGCG CTGGCGGTTG ATATTGAGCG CAATCTGGTC
AAGCCGGTCG AGGAAATCGG CCTGCCTGTC AGCATTGAGA CCCGCACCGG TGATACGCCG
CAGGCCAAGC GGGCGCGCCA GAAGCTCAAT CCGCCGGATA TTCTGCTGAC CACGCCGGAA
CAGCTGGCTT TGCTGATCGC CAATGGCGAA GCCCCCCGCT TTTTCCGGGA TCTGCGCTAT
GTGATCTTCG ACGAATTGCA TTCTCTCGTC ACCTCCAAGC GTGGCCATCT TCTGGCGCTG
GGGCTGGCCC GGCTGCGGAT CTTGGCACCT GGACTTCAAA CCATCGGACT GTCTGCCACC
GTTGCCGATC CGCCGGAGCT GCAACGCTGG CTCGTGGCCC AAAGGCCGGG GGAAGTGGCC
TTGGCCGGGC TGGTGACAGT GGCGGGCGGG GCAAGGCCCA ATATCACCAT TTTGAAGACG
CAGGAGCGCA TTCCCTGGTC CGGCCATTCG GCCCGCTATG CCATTCCTGA CATTTATGCC
GTGCTGAAAG AGTTTGCGAT GACGATCATT TTCGTCAACA CCCGCTCCCA GGCGGAAATG
CTGTTTCAGG AATTGTGGAC GGTCAATGAT GACAGCCTGC CGATTGCCCT GCATCACGGC
TCGCTGGATG TCGGGCAGCG CCGCAAGGTG GAAGAGGCGA TGGCCGCCAA CCGGCTGCGT
GCCGTGGTCG CCACCTCGAC GCTGGATCTC GGCATCGACT GGGGCGAGGT CGATCTCGTC
ATCCATGTCG GCGCGCCGAA GGGCGCCAGC CGATTGGCCC AGCGGATTGG CCGGGCCAAT
CACCGCATGG ATGAGCCGAG CCGCGCCATT CTGGTTCCCG CCAACCGCTT CGAGGTGATG
GAATGCCAGG CGGCGCTGGA TGCCAACTAC CTCGGTGCGC AGGACACTCA AGCCGTGGGT
GAGGGGCCGC TGGATGTTCT TGCCCAGCAT GTGCTGGGCA TGGCCTGTGC CGCACCCTTC
GACACGGAGG CACTTTACAA TGAAGTAACG TCAGCCATGC CTTACGTTTC ACTGTCGCGA
GACACGTTCG GGCGGATTGT CGATTTTGTC GCCACAGGCG GTTATGCGCT GAAGACCTAT
GATCGCTATG CCCGCATTCG CAAGACGGCA GAAGGGCGCT GGCGGATTTC CAATCCGGCG
GTGGCGCAGC AATACCGGCT CAATCTCGGC ACCATTGTCG AGGAGCCGAT GCTGAATGTC
CGGCTCGTCA AGCGCAATCA TCTCGGCTCC ATCGGGCGAG GCGGCATGAG CCTTGGCAAG
GTGGAGGAGT ATTTCGTCGA GCAATTGGCG CAAGGCGATA CATTCCTGTT TTCCGGCAAG
GTCTTGCGGT TCGAAGGCCT GCGTGAAAGC GAATGCCTGG TGTCCAATGC TTTTTCGCAG
GACCCGAAAA TTCCCGCCTA TGCGGGCGGA AAATTTCCGC TCTCGACCTA TCTTGCCGAT
CAGGTGCGGG CCATGCTGGA CGATCCCGCC CGCCGCGCCA GCCTGCCGGA TCAGGTGCGT
GACTGGCTGG AAATCCAGAA GGCCAAATCC GTGCTGCCGA AGCGTGGCGA CTTGCTGGTC
GAGACTTTCC CGCGCGGCAA GCGCTTCTAC ATGGTGCTTT ATCCGTTCGA GGGACGGCTG
GCCCATCAGA CGCTGGGCAT GCTGCTGACG CGGCGGCTGG AGCGGTGGCG GGCCAAGCCG
CTTGGCTTTG TGGCGACGGA TTACGCCCTG GCGATCTGGG GGCTGGAGGA TCTCAGCTGG
ATGGTGTCCA CGAATAAGCT TTCGCTGGCT GACCTGTTTG AGGAAGACAT GCTGGGCGAC
GATCTGGAGG CATGGCTGGA CTCCTCTTAT ATGCTGAAGC GCACCTTTCG CACCTGCGCG
GTGATTGCCG GGCTGATTGA AAAACGCCAT CCCGGCAAGG AAAAATCCGG CAGGCAGGTG
ACGGTCTCCG CGGACCTGAT CTATGATGTG CTGCGCGCCC ATGAGCCTGA TCATATCCTG
TTGCAGGCCA CCCGTGCCGA TGCGGCAAAC GGTCTTTTGG ACATTGCCCG GCTTGGCGAT
ATGCTAAAGC GAATCAAAGG CCATATTCTC CATAAGGCAC TGGACCATGT CTCGCCGCTG
GCCGTGCCGG TCATGCTGGA GATCGGCCGG GAAACGGTGG TCGGCGAAGC GCAAGAAGAT
GTGCTGGCGG AAGCAGCGGA AGATCTCATC GCCGAAGCGA TGGGATAA
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| Protein sequence | MSEPESTLSI LPPPFERWFA QKGWQPRAHQ LELLARAGQG ESTLLIAPTG AGKTLAGFLP
SLVDLTRRGR KRPGEAFTGI HTLYISPLKA LAVDIERNLV KPVEEIGLPV SIETRTGDTP
QAKRARQKLN PPDILLTTPE QLALLIANGE APRFFRDLRY VIFDELHSLV TSKRGHLLAL
GLARLRILAP GLQTIGLSAT VADPPELQRW LVAQRPGEVA LAGLVTVAGG ARPNITILKT
QERIPWSGHS ARYAIPDIYA VLKEFAMTII FVNTRSQAEM LFQELWTVND DSLPIALHHG
SLDVGQRRKV EEAMAANRLR AVVATSTLDL GIDWGEVDLV IHVGAPKGAS RLAQRIGRAN
HRMDEPSRAI LVPANRFEVM ECQAALDANY LGAQDTQAVG EGPLDVLAQH VLGMACAAPF
DTEALYNEVT SAMPYVSLSR DTFGRIVDFV ATGGYALKTY DRYARIRKTA EGRWRISNPA
VAQQYRLNLG TIVEEPMLNV RLVKRNHLGS IGRGGMSLGK VEEYFVEQLA QGDTFLFSGK
VLRFEGLRES ECLVSNAFSQ DPKIPAYAGG KFPLSTYLAD QVRAMLDDPA RRASLPDQVR
DWLEIQKAKS VLPKRGDLLV ETFPRGKRFY MVLYPFEGRL AHQTLGMLLT RRLERWRAKP
LGFVATDYAL AIWGLEDLSW MVSTNKLSLA DLFEEDMLGD DLEAWLDSSY MLKRTFRTCA
VIAGLIEKRH PGKEKSGRQV TVSADLIYDV LRAHEPDHIL LQATRADAAN GLLDIARLGD
MLKRIKGHIL HKALDHVSPL AVPVMLEIGR ETVVGEAQED VLAEAAEDLI AEAMG
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