Gene Avi_0610 details

Gene Information

• Locus tag: Avi_0610
• Symbol: pleD
• ID: 7388999
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 527652
• End bp: 529601
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643650227
• Product: two component response regulator
• Protein accession: YP_002548439
• Protein GI: 222147482
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACGA CCATGACGCT TATTCTGGTC AATAGTGCCC TTGTCACGCT GTTTTCCATC 
GTTTCGAGCA GGCTGGCCGG ATGGCTGGAA CAGCAGAACC CTGCCTATAG GCCAATCGGG 
CTTGGTATTG CCGGCGGCGT CACGGCCATC GTCGCCATGC AATTTCCGAT AACGATCGTA 
CCGGGTCTTT TCATGGATCT TCGCAGCAGT GCCATTGCGG TCTGCGCACT GATGGGCGGC 
CCGGTTTGTG CCATTTTTGC AGCGGGGATT GCTATAACCT GGCGTGTTCT GGAAGGTGGG 
ATCGGCGCTG GAGCCGGAGC TCTTTCTATT TTACTGGCTG CAGGCGCGGG TGTTTGGGCA 
GGCTGGCGCG ATGAACAGGC AATCTTGAGC CTACGGCGCA TCGCGGCCAT GGGCCTTGGT 
CTCATCATTC TGCCACAGGT AACGCTCTTG GTCATTCCGT CTGAAACCTG GCCAGCGGTG 
TTTGCCGTCT TGCCACTGCT TTTGCCAATG CAATCCCTAG CTGCTCTGCT TGCAGCGACT 
GTGATCAGAA GCGAGACATT GCAACGCGCT CGATTACAGG AGGCAAAACT TTACCGGACC 
GTGATTGAGA GCATGCCGGA AACCCTGACG GCCAAGGATC GAGATGGCCG CTTCATCCTG 
ACCAATCTCG CCTCGGCCAC GGCCCTGGGC CTGAACGACC CCGCGCAGAT GATTGGCAAG 
ACCGATGCGG ATTTTCATTC CCCCGAGCTT GCAGCCCGCT ACCGTGCTGG CGAAGAGGCT 
GTCTTTGCCG AGGGCAAACC TGTCCATATC GAGCAGAGCT ATGAAACGCC TGCCGGCGCC 
AAGGGCTGGT ATTCGACCCT GAAATATCCG ATCCACGACC AGAGGACCGG AGAGATCATC 
GCTCTTGCCA CCCATAGCCG CGACATCAGC AAGCAGAAGG AACTGGAGCA GCAATTGGCT 
GAGAGCCGCC AGCAATTGGC CGATGCCCTG GCCAATATGG CCGATGGGCT TGTGATGTTC 
GATCGACAGG GAAAGCTGGT CTATTGCAAT GAACGCTATC GCTCCATGTT TTCCAAAACC 
GCGGATATCA GGGTGCCTGG CGCTGATCTG CACGACATCA TCGCCGCTTC GCGCGCACGT 
GGCGAAGAGA TGACACCTCG CGACAGCGAC CCCATCCTGC CAGAACAAGT CTTCGACAGT 
CTGCCTGTTT TACCGCTGGT GCCGGGCAAG CGCGAAATCA CCCTCTGGGA CGGACGAAGC 
CTCGAAGCGC AGACAAGAAG TGTCGGCGGA GGCGGTTCGC TGATCGTCTT TACGGATATT 
ACCAGGGCAA AACAGGCGGA GGGTTTACTG CGCCATACCA ATCGCGCCCT GGAAAAAGCG 
GCCTTTACCG ATGGGCTTAC CGGCCTTTAC AACCGGCGCG CCTTTGATGT GCAACTCCGG 
CAAGAATTTG CACGCTCCCA CCGCACCGGG TCGGGCGTCA GCCTTTTGAT GATCGATATC 
GACCATTTCA AACTGTTTAA CGATCGCTAC GGACACCAGG CCGGGGACCA ATGCCTGCGC 
CAGATCGCCG CGACTTTGCG TTCGGTCGCA AAACGCAGCA CCGATATCGC TGCCCGCTAT 
GGCGGCGAGG AAATGGCGCT CATTCTCTCC GATACCGATC TTGCCGGAGG CTCGACTGTG 
GCGGAATACT ATTGCCAGGC AGTTCGCGAC CTGCACATTC CCCATGGCGA TAGCGAAAAG 
GGTATCGTCA CCGTCAGTAT CGGCGTGGCA GCTGCCCCGT CCGACGATAT ACAGTCCAGC 
GACGATCTGG TGGCGAGCGC CGACGCTGCA CTTTACCAGG CAAAACACAG CGGCCGCGAC 
CAGTATGTCA CCGCCAGCCA TGGTCCCGCC CTGGACACGG TCCAGCAAAA CCGCAAACTG 
GTTTTGGCAA TCGGCAATGC CTTAAAGTAA 

 

Protein sequence

MNTTMTLILV NSALVTLFSI VSSRLAGWLE QQNPAYRPIG LGIAGGVTAI VAMQFPITIV 
PGLFMDLRSS AIAVCALMGG PVCAIFAAGI AITWRVLEGG IGAGAGALSI LLAAGAGVWA 
GWRDEQAILS LRRIAAMGLG LIILPQVTLL VIPSETWPAV FAVLPLLLPM QSLAALLAAT 
VIRSETLQRA RLQEAKLYRT VIESMPETLT AKDRDGRFIL TNLASATALG LNDPAQMIGK 
TDADFHSPEL AARYRAGEEA VFAEGKPVHI EQSYETPAGA KGWYSTLKYP IHDQRTGEII 
ALATHSRDIS KQKELEQQLA ESRQQLADAL ANMADGLVMF DRQGKLVYCN ERYRSMFSKT 
ADIRVPGADL HDIIAASRAR GEEMTPRDSD PILPEQVFDS LPVLPLVPGK REITLWDGRS 
LEAQTRSVGG GGSLIVFTDI TRAKQAEGLL RHTNRALEKA AFTDGLTGLY NRRAFDVQLR 
QEFARSHRTG SGVSLLMIDI DHFKLFNDRY GHQAGDQCLR QIAATLRSVA KRSTDIAARY 
GGEEMALILS DTDLAGGSTV AEYYCQAVRD LHIPHGDSEK GIVTVSIGVA AAPSDDIQSS 
DDLVASADAA LYQAKHSGRD QYVTASHGPA LDTVQQNRKL VLAIGNALK