| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0567 |
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| Symbol | |
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| ID | 7388967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 479498 |
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| End bp | 480973 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643650195 |
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| Product | secretion protein HlyD family |
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| Protein accession | YP_002548407 |
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| Protein GI | 222147450 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGTTT CGCTCAAGCG ATCTCAAGGA GCAGTCACGC TGCTGCGCAG AACCGATAAA
CCAGTCAGGA CGGACCAGGA ATTTCTTGCG CCGGCTCTCG AGATCTTGGA GACCCCGCCC
TCGCCTGTGA GAATGGCGCT TGTCGTGATC ATCGCCGCTT TGTTTGCGGT CGCCATCACT
TGGGCAGCGG TTGGTAAAAT CGATATTGTC GCAACGGCTC AAGGCAAAAT CGAGCCAACG
CTTAAGGTAA AGATCGTTCA ACCTCTGGCC ACCGGTAAAG TGTCCGACGT TCTGGTGCAA
AATGGCGACC ACGTCTCCAA GGACCAAGTT CTCGTGCGTC TGGATGACTC GTCGGCTGCA
TCTCAGTATG ATGATTTGTC GGAGCAACTG GCCGCCAGCA GAGCCGAAGT CGCTCGACGT
AGTGCCGCTA TTGAGACTGT TTCGTCACGG AACTGGCCGG TTGGGGGAGC GACACAAATC
AATGTTGCCT GGCCCGAAGG AATATCGGTT GCGTTGCAAC GCCGGGAACA AAGCGTCCTT
GACAGCGACG TCGCGCAACT GTCCGCACAA CTCTCACTCA TCGATAGTCA AATCGCTCAG
AAGACGATCG ATTCCGATGC GTTCGGAGCG ACAGTTTCGG CACAGGAGAG CCTAATCTCA
ACACTAAAGA AGCTGACATT TATGCGCGAG ACGCTGTCTC AGAACAACGC CATGTCGACT
GCGGATTGGC TGAACGCTTT GCAAGAAGAA GAGAAGGAAC AGGTTTCCTT GCAAAGCGAC
ATCAATGAAA AGCTTGATGC CGACGCAAAC ATCGCAGTCC TCAAGCGACA AGCCGTATCG
ACGACCCAAT CATTCATCGC CGATTACGCC CAGAAGCTAG AAGCAGCGGA CGAACAGGTA
CAGGAACTGA CACAGCAGTT GCGTGAAGCC AAGGCCCAAC TCGATGATAT GACGTTGCGT
AGCCCGGTCG ATGGTACGAT TGAAGCATCG ACACTCACAT CGATCGGGCA GGTGCTGACC
AGCGGATCAG AGGTGTTGCG CGTTGTTCCC GAGGGAAGCC ATCTCGATAT TCAAGCATAC
ATCACCAATG ATGAGATCGG GTTCGTTCAG GTCGGACAAG CAGCGACCAT CAAGGTAACT
GCGTTCCCTT ATACGCAGTA CGGCACGATC AGTGGAACTG TCCTTCAGGT TGGCAAGGAT
GCCGTATCGA CCTCTCAAGC CCAAGCGGAT CTCGCAGATT CCTCCTATAC AATGACCACG
ACGGCATCAG GGAGCACGTC TCAATCCGCG GATACGCTTG TATTTCCCGT CATCGTCCAG
TTGGACAAGA ATTTCATCGG AACCGCAGAG CGCAGCGCCT ACGTGTCGCC TGGCATGTCG
GTGTCAGTCG ACATCAATAC AGGTGACAGG ACTATTCTCG ATTATCTTTT CGCGCCCCTT
GTCGATGTCA CAAGCTCGGC CCTGCACGAA CGCTGA
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| Protein sequence | MNVSLKRSQG AVTLLRRTDK PVRTDQEFLA PALEILETPP SPVRMALVVI IAALFAVAIT
WAAVGKIDIV ATAQGKIEPT LKVKIVQPLA TGKVSDVLVQ NGDHVSKDQV LVRLDDSSAA
SQYDDLSEQL AASRAEVARR SAAIETVSSR NWPVGGATQI NVAWPEGISV ALQRREQSVL
DSDVAQLSAQ LSLIDSQIAQ KTIDSDAFGA TVSAQESLIS TLKKLTFMRE TLSQNNAMST
ADWLNALQEE EKEQVSLQSD INEKLDADAN IAVLKRQAVS TTQSFIADYA QKLEAADEQV
QELTQQLREA KAQLDDMTLR SPVDGTIEAS TLTSIGQVLT SGSEVLRVVP EGSHLDIQAY
ITNDEIGFVQ VGQAATIKVT AFPYTQYGTI SGTVLQVGKD AVSTSQAQAD LADSSYTMTT
TASGSTSQSA DTLVFPVIVQ LDKNFIGTAE RSAYVSPGMS VSVDINTGDR TILDYLFAPL
VDVTSSALHE R
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