Gene Avi_0563 details

Gene Information

• Locus tag: Avi_0563
• ID: 7388965
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 477471
• End bp: 478187
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643650193
• Product: transposase protein
• Protein accession: YP_002548405
• Protein GI: 222147448
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3316] Transposase and inactivated derivatives

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAGAT CTAGCCGTGA TCCTCTTTAT CGTCGCCACC GATTTGCCGC CGAGGTGATT 
GCCCATGCAG TTTGGCTGTA TTTCCGGTTT CCGCTGAGCC TGCGTATGGT CGAGGATCTG 
CTGGCACTGC GTGGCATCAT CGTCTCTCAT CAAACCGTGC GGCTCTGGGC GGAGAAATTC 
GGTAGACATT TTGCCAACGA TATCCGCAAG CGATCTGCCG GCAGGCTCGG GGACAAATGG 
TATCTCGATG AGGTTGTTAT CACCATCGGT GGAAGGAAAC ACTGGCTTTG GCGCGCCGTT 
GATCAGGATG GTTTTGTTAT CGACGTGCTG GTGCAAAGCC GCCGCAATGC CAAGGCGGCA 
AAACGTTTGA TGCGCAAGCT CGTGAAAGCC CAAGGCCGCG CGCCGCGTGT GATGATCACC 
GATAAAATAC GATCCTATGG TGCAGCAAAG CGGGAGGTCA TGCCCGGCGT TGAGCATCGT 
TCTCACAAGG GATTGAACAA TCGGGCGGAA AACTCTCATC AGCCCGTCCG ACGACGGGAG 
AGGATCATGA AGCGCTTCAA GTCAACACGA CATCTTCAGC GTTTCGTTTC CATCCATGAC 
CCGATCACCA ACCTTTTTCA CATTCCCCGC CACGATATTC CATCCGTCCA CCATCGCGAA 
CTGCGAACAG CAGCCATGCA AGCATGGCAC CAAATCGCAC GCCTTCACGC CGCATGA 

 

Protein sequence

MTRSSRDPLY RRHRFAAEVI AHAVWLYFRF PLSLRMVEDL LALRGIIVSH QTVRLWAEKF 
GRHFANDIRK RSAGRLGDKW YLDEVVITIG GRKHWLWRAV DQDGFVIDVL VQSRRNAKAA 
KRLMRKLVKA QGRAPRVMIT DKIRSYGAAK REVMPGVEHR SHKGLNNRAE NSHQPVRRRE 
RIMKRFKSTR HLQRFVSIHD PITNLFHIPR HDIPSVHHRE LRTAAMQAWH QIARLHAA