Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0555 |
Symbol | |
ID | 7388961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 473273 |
End bp | 474115 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643650190 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002548402 |
Protein GI | 222147445 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGGATT GGCAAGACCT TCGATATTTC CTCGCTGTCG CGCAGCACGG TTCTCTGACG GCCGCTGCCC GGGTGTTGGG TGTTGACCAT GCCACGGTTG GCAGACGCAT CGCGCATCTT GAAGCAACCA CGGGGCTGAA GCTGATTGAC CGTTTGCCAC GTGCGACGCG TCTGACCGTG CATGGTCAAT CTCTGGCTGA GGCCGCTAAG GCGATGGAGC GCGGCGCAGA GGGGGTTCAT CGCCATTTGC GCGGCAAAAG CACGGGTCTG TCGGGAAGTG TGGTGGTCAG TGCGCTGCCA GTGATCAGCG CCTTTGTGAT CGCACCCAGC CTGTCACAGC TGCGATTAAA CCATCCCGAT CTTCAAGTCG TCCTCTTGGC AAGCTCATCG GTTGCCTCCC TCGAAAAGGG GGAGGCTGAT TTGTCTCTCG GCTTTGTCAG GCCACGGGCT GAAGGCCGTA TCGTGCGCGA GATGGGACTT TTGCCGCTCG CTCTTTATGC GGCAAGCTCT CTTGCTGATA TGGCCATCGA GAACCAAAGT TTTATTGGCT TTGAACAGAG CTTTGGCCAT ATTGAGCAGC AACGTTGGCT TGAAGACGTT GCCGGGTCGC GGCCTTTTGC GCTGCGAACA AACGACGTCG TGACGCAGCA TCAGGCAGCC CGTGCGGGTC TGGGCCTGGC ACTTCTGCCA TGTTTGTTGG GAGATGCAGA TGAGGGACTT GTCAGAGTGG CGGTGGGTCG AGCAACACCC TCTCGCCAGC TCTGGTTGTC CGTGCACGCA GATATCCGAA AATCTCCGGC GGTGCGTGCC GTAATGGATC ATTTGATCGA AACTTTCAAA TAG
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Protein sequence | MLDWQDLRYF LAVAQHGSLT AAARVLGVDH ATVGRRIAHL EATTGLKLID RLPRATRLTV HGQSLAEAAK AMERGAEGVH RHLRGKSTGL SGSVVVSALP VISAFVIAPS LSQLRLNHPD LQVVLLASSS VASLEKGEAD LSLGFVRPRA EGRIVREMGL LPLALYAASS LADMAIENQS FIGFEQSFGH IEQQRWLEDV AGSRPFALRT NDVVTQHQAA RAGLGLALLP CLLGDADEGL VRVAVGRATP SRQLWLSVHA DIRKSPAVRA VMDHLIETFK
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