Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0540 |
Symbol | truA |
ID | 7388946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 459475 |
End bp | 460254 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643650174 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_002548387 |
Protein GI | 222147430 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.999285 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCACGCT ACAAGCTGAC CGTGGAATAT GACGGCACAC CCTATGTCGG CTGGCAACGG CAGGACAATG GTCCCTCCGT GCAGGGCGCG CTCGAAGCGG CAGTGCTTGG CCTGACGGGG GAAACGGTGG CGATCCGGGG TGCGGGCCGC ACCGATTCCG GCGTCCATGC CAGCGGCCAG GTGGCGCATG TCGATCTTTT GCGTCAATGG ATACCCTACA AGCTGCGCAA TGCGCTGAAC GCGCATCTGG CGCAGGCTGG GCAAGCAATT TCTATTCTGG CTGCCGAAGC TGTCCCTGAT GCCTTCGATG CGCGATTTTC CGCCCTGAAG CGGCATTATC TTTATCGGAT CATGTCACGC CCGTCCCGGC TGGCGCTGGA GGCCAATCGC GCCTGGTGGG TATCCAAACC GCTGGACCAC GAGGCCATGC ATGCCGCCGC CCAAATGCTG GTCGGCAATC ACGATTTTAC CACCTTCCGC TCGGTTCATT GTCAGGCCAT CAGCCCGGTG CGCACGCTGG ACCGGCTGGA TGTCAGCCGC AACGGCGATC TCATCGAGAT CCGCGCCTCC GCACAGAGTT TTCTGCACAA CCAGATTAGA TCTTTTGCTG GCACCTTGAA AATGGCGGGA GAAGGCAAGA TGACGCCGGA GGATGTTCGC GCCGCCCTGG AGGCCCGCGA CCGCAAGGCC TGCGGCCCGG TGGCACCGCC GCAGGGCCTG TATTTTTTGC AGGTCGACTA CCCGACCGAT GGCAATTGGC GGCCGTATTC GAAAACCTGA
|
Protein sequence | MPRYKLTVEY DGTPYVGWQR QDNGPSVQGA LEAAVLGLTG ETVAIRGAGR TDSGVHASGQ VAHVDLLRQW IPYKLRNALN AHLAQAGQAI SILAAEAVPD AFDARFSALK RHYLYRIMSR PSRLALEANR AWWVSKPLDH EAMHAAAQML VGNHDFTTFR SVHCQAISPV RTLDRLDVSR NGDLIEIRAS AQSFLHNQIR SFAGTLKMAG EGKMTPEDVR AALEARDRKA CGPVAPPQGL YFLQVDYPTD GNWRPYSKT
|
| |