Gene Avi_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0540 
SymboltruA 
ID7388946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp459475 
End bp460254 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content62% 
IMG OID643650174 
ProducttRNA pseudouridine synthase A 
Protein accessionYP_002548387 
Protein GI222147430 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0101] Pseudouridylate synthase 
TIGRFAM ID[TIGR00071] pseudouridylate synthase I 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.999285 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCACGCT ACAAGCTGAC CGTGGAATAT GACGGCACAC CCTATGTCGG CTGGCAACGG 
CAGGACAATG GTCCCTCCGT GCAGGGCGCG CTCGAAGCGG CAGTGCTTGG CCTGACGGGG
GAAACGGTGG CGATCCGGGG TGCGGGCCGC ACCGATTCCG GCGTCCATGC CAGCGGCCAG
GTGGCGCATG TCGATCTTTT GCGTCAATGG ATACCCTACA AGCTGCGCAA TGCGCTGAAC
GCGCATCTGG CGCAGGCTGG GCAAGCAATT TCTATTCTGG CTGCCGAAGC TGTCCCTGAT
GCCTTCGATG CGCGATTTTC CGCCCTGAAG CGGCATTATC TTTATCGGAT CATGTCACGC
CCGTCCCGGC TGGCGCTGGA GGCCAATCGC GCCTGGTGGG TATCCAAACC GCTGGACCAC
GAGGCCATGC ATGCCGCCGC CCAAATGCTG GTCGGCAATC ACGATTTTAC CACCTTCCGC
TCGGTTCATT GTCAGGCCAT CAGCCCGGTG CGCACGCTGG ACCGGCTGGA TGTCAGCCGC
AACGGCGATC TCATCGAGAT CCGCGCCTCC GCACAGAGTT TTCTGCACAA CCAGATTAGA
TCTTTTGCTG GCACCTTGAA AATGGCGGGA GAAGGCAAGA TGACGCCGGA GGATGTTCGC
GCCGCCCTGG AGGCCCGCGA CCGCAAGGCC TGCGGCCCGG TGGCACCGCC GCAGGGCCTG
TATTTTTTGC AGGTCGACTA CCCGACCGAT GGCAATTGGC GGCCGTATTC GAAAACCTGA
 
Protein sequence
MPRYKLTVEY DGTPYVGWQR QDNGPSVQGA LEAAVLGLTG ETVAIRGAGR TDSGVHASGQ 
VAHVDLLRQW IPYKLRNALN AHLAQAGQAI SILAAEAVPD AFDARFSALK RHYLYRIMSR
PSRLALEANR AWWVSKPLDH EAMHAAAQML VGNHDFTTFR SVHCQAISPV RTLDRLDVSR
NGDLIEIRAS AQSFLHNQIR SFAGTLKMAG EGKMTPEDVR AALEARDRKA CGPVAPPQGL
YFLQVDYPTD GNWRPYSKT