| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0537 |
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| Symbol | glgX |
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| ID | 7388943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 455806 |
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| End bp | 457893 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643650171 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_002548384 |
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| Protein GI | 222147427 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATCC AAACGACCAA CTTCAAAATT CTTCCCGGCG AGTGGCAACG GCTGGGTGCC
CGCTACACTG GCGAAGGGGT TAATTTTGCC CTGTTTTCCG CCCACGCTGA TCGCGTTGAG
CTGTGCCTCT ACGATCCCAG CGGCAGCATT GAGATCGCCC GGATGGATCT GCCTGATTAC
ACCAATGAAA TCTGGCACGG GTTTGTACCC GGCCTGAAAC CGGGTGCGCT CTATGGCTTT
CGTGTTCATG GACCGTTCGA GCCTGAAAAC GGCCATCGCT TCAATCATAA CAAGCTACTG
CTCGATCCTT ATGCCCGCGA ACTGGTGGGC GATATCCGGT GGTCGCCCGA AGTGTTCGGC
TATCATTTCG ACGATCCTGA CAAGGATCTG TCCTTCAACG ATCTCGACAG CGCGGCTTTC
ATGCCCAAAT GCCGGGTCGT CGATCCCAAT CAGATCGATT GGGGCAATGA TCGCCGTCCT
CAGGTCTCCT GGGCCGATAC GATTGTCTAT GAAACCCATG TCAAGGGTTT CACACAGCTC
AATCCCGCCA TTCCGCAAGA ACTGCGCGGC ACATTCGAAG GCCTCGGTCA CAAGGCGGCG
GTTGATTATA TCAAGAGCCT TGGCATTACC TCTGTCGAAT TGCTGCCCAT CCACGCCTTC
CCGGATGACG GCCCGTTGCT GGACAAGGGC CTGAAGAATT ACTGGGGTTA TAACACCATC
GGCTTTTTTG CCCCTGCGCA CCGTTATTAC GGCGCAAACG GCATCCAGGG CTTCCGCGAC
ATGGTTCGCG CTTTCCATGA TGGTGGTATC GAGGTCATTC TCGACGTGGT CTACAATCAC
ACGGCGGAAG GCAATGAACT TGGCTCGACC CTATCCTTCA AGGGCATCGA CAACTTTTCC
TACTACCGCA CCCTGCCGGA TAATCACCGT TATTACATCA ATGATACCGG CACCGGCAAC
ACAGTGAACA CCTCCCATCC GCGGGTTCTG CAGATGGTGA TGGACTCGCT GCGCTACTGG
GCCGATGACA TGCATGTCGA TGGCTTCCGT TTCGATCTCG GCACCATTCT GGGCCGCGAG
CCCGAGGGCT TCGATGAGCG CGGCGGATTT TTCGACGCGG TTACCCAGGA CCCGACACTT
GCCGGCGTCA AGCTGATCGG CGAGCCGTGG GACATCGGTC CAGGTGGTTA TCAGGTTGGC
GGCTTTCCAC CGGGCTGGGC GGAGTGGAAT GACAAATACC GTGACAGCTG CCGCGAATAT
TGGCTGAACG GTGACAATTG CGCTCCAGAT TTCGCGGCTC GTCTGCTGGG CTCCGGCGAT
CTCTACGACC AGCGCGGCCG CCGCCCCTGG GCCAGCGTCA ATTTCATCAC CGCCCATGAT
GGCTTCACGC TGAACGACCT CGTCTCCTAC GATGGCAAGC ACAACGAAGA CAATGGCGAG
GATAATAACG ACGGTCACAA CGACAATCGC AGCCATAATT ATGGTCACGA GGGTCCGACG
GATGACGAAG GCACCAATGC GGTGCGCGAG CGCCAGAAGC GCAATTTCCT GGCCACTCTG
CTGTTTTCCC ACGGCACGCC GATGCTGCTG GCCGGTGACG AATTCGGTCG TTCGCAGATG
GGCAATAACA ACGGCTATTG CCAGGATAGC GAAATCAGCT GGCTGCATTG GGAAAATCTG
CCCGACAGCG CTGATGCCCT GCGTGATTTC ACGAAGCGGG TCATCTCACT TCGCAAGGAG
CAGCCGTTGC TGCGGCGGGA GAACTGGCGC GATGGCATGA TGATCGATTG GTACAGCGTC
AGCGGCGGCC GTCAGACCTC GGAAAACTGG GAAAACAGCA ATGCGCTGAT CACACGCCTA
CATCGTGAAG ACCTCCAGGC CGAAGAGGGC ATCTGGTCGG ATATCATGAT GCTGTTCAAC
CCACTCGATG AAGACACCAC CTTCACCATT CCCAAGGAAA GCGGCGGAGA ACGGGTACTC
GAACTGATCA CCGGCGATCC GGAGCGTCAG GGCGAGAAGG TCAAGCAAGG CGAAACATTC
AAACTGCTGC CGCGCAGCAT GGCGCTTTTG CGGACGATTC AAACCTGA
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| Protein sequence | MDIQTTNFKI LPGEWQRLGA RYTGEGVNFA LFSAHADRVE LCLYDPSGSI EIARMDLPDY
TNEIWHGFVP GLKPGALYGF RVHGPFEPEN GHRFNHNKLL LDPYARELVG DIRWSPEVFG
YHFDDPDKDL SFNDLDSAAF MPKCRVVDPN QIDWGNDRRP QVSWADTIVY ETHVKGFTQL
NPAIPQELRG TFEGLGHKAA VDYIKSLGIT SVELLPIHAF PDDGPLLDKG LKNYWGYNTI
GFFAPAHRYY GANGIQGFRD MVRAFHDGGI EVILDVVYNH TAEGNELGST LSFKGIDNFS
YYRTLPDNHR YYINDTGTGN TVNTSHPRVL QMVMDSLRYW ADDMHVDGFR FDLGTILGRE
PEGFDERGGF FDAVTQDPTL AGVKLIGEPW DIGPGGYQVG GFPPGWAEWN DKYRDSCREY
WLNGDNCAPD FAARLLGSGD LYDQRGRRPW ASVNFITAHD GFTLNDLVSY DGKHNEDNGE
DNNDGHNDNR SHNYGHEGPT DDEGTNAVRE RQKRNFLATL LFSHGTPMLL AGDEFGRSQM
GNNNGYCQDS EISWLHWENL PDSADALRDF TKRVISLRKE QPLLRRENWR DGMMIDWYSV
SGGRQTSENW ENSNALITRL HREDLQAEEG IWSDIMMLFN PLDEDTTFTI PKESGGERVL
ELITGDPERQ GEKVKQGETF KLLPRSMALL RTIQT
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