| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0509 |
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| Symbol | |
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| ID | 7388503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 430606 |
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| End bp | 431892 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650149 |
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| Product | ABC transporter membrane spanning protein |
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| Protein accession | YP_002548362 |
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| Protein GI | 222147405 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTTG CCGTCCTTAT CCTCAGCTTT TCGTTTCTGC TGCTGATCGG CGTTCCCATT
GCATGGTGCA TGGGCGTGGC CAGCCTGCTG ACAATCTATG TCGGCCATCT CGGCCTGCCC
TTCGCCTGGT TTGCACAGCA GACGATCCGC GGTGCCGATG CCATTACCCT GGCGGCCATT
CCTCTGTTTC TCTTTGCCGG GGAATTGATG AACCGTGGCG GCCTGACGGC CCGGATCATG
CGGGTCGCTG AACATGTCTT CGGTCGCATT ACTGGCGGCC TTGGCCTCGT CAATGTTGCG
ACGGCCCTCG TCTATGGCGG CATCAGCGGC TCGGCGACCG CCGATACCGG CGCTGTCGGA
TCGATCATGA TCCCCGCCAT GGCCGAGCGA GGCTATCCGA AAGCCTTTGC CGCCGCCGTC
ACCGCCGCGT CGGGAACCCT CGGCATTATC GGTCCGCAGA GTGTCATTCT GATCCTCTAT
GGCGTGCTGA CGAACACCTC CATCGGCGGT CTGCTGGTTG CAGCCCTGCT GCCAGGCCTG
TTCATCGCGG TGACATTCAT GGTCACATCC TACATCGTCG CTAAACGCCA TAATTTTCCG
CGCAATGAAA CACCCGCGCA ATGGGGTGAA ATTGGCAGGG ATGCGCTTGG CGCCCTCCCT
GCCCTGCTGA TGCCCGTGCT GGTGCTGGGC TCGATCATCG GCGGTATCGC CACAGCCACG
GAAGCCTCGG CGCTCGCCGT TGTCTATTCA TTCCTGATCG GAATTTTCGT CTATCGTGAG
CTTCCGCTGC GGTCGCTCTA TTCGGCGGCG TCGGCTGCCG TGGCAACGAC AGGCGTGATC
ATGATGATCA TGGCACTCGC GACACCATTC GGATGGATTC TGACGGTCGA ACAGGTGCCA
GCCAATGCCG CCGCCTGGAT TACCGGGCTG CATACGACAC CGCTCGTCAC CATCATCCTC
GTGCTGGTGT TGTTGAAAGT CGTTGGCTTC TGGCTCGATC TTGGGCCAGC GCTGATCATT
CTGGCGCCGA TACTGGTTCC TATCGCCTTG GCAGCGGGCA TGACGCCTTA TCAGACCGGT
ATTGTCTTCA CCATGACGCT CGGCATCGGC CTGTTTACCC CGCCGATCGG CACGAACATC
TTCGTCGTCT GCAATGTCGC GAAAATCGAC ATGTGGTCGG TCTCGAAGTG GCTGGTTCCC
TATTGGATTG CCAGCGTGGT TTGTGTTGCA GCACTTGTCG CTTTCCCCAT CCTGACCGAA
TGGCTTCCAA GCCTGTTTGG AGTTTAA
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| Protein sequence | MTVAVLILSF SFLLLIGVPI AWCMGVASLL TIYVGHLGLP FAWFAQQTIR GADAITLAAI
PLFLFAGELM NRGGLTARIM RVAEHVFGRI TGGLGLVNVA TALVYGGISG SATADTGAVG
SIMIPAMAER GYPKAFAAAV TAASGTLGII GPQSVILILY GVLTNTSIGG LLVAALLPGL
FIAVTFMVTS YIVAKRHNFP RNETPAQWGE IGRDALGALP ALLMPVLVLG SIIGGIATAT
EASALAVVYS FLIGIFVYRE LPLRSLYSAA SAAVATTGVI MMIMALATPF GWILTVEQVP
ANAAAWITGL HTTPLVTIIL VLVLLKVVGF WLDLGPALII LAPILVPIAL AAGMTPYQTG
IVFTMTLGIG LFTPPIGTNI FVVCNVAKID MWSVSKWLVP YWIASVVCVA ALVAFPILTE
WLPSLFGV
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